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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACCCACAAGTTGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatcaatcccttcctgatgtatctaagcccgtttgaagttagtagaattagttttcatctgctatgctaccagtgttggagcttaagttttccacttagcaaagattaaaagttactgaaatgagtctttgttaagcaccttatttttttcatgttatcgtgcaatttacacag

Basic information

species Physcomitrella patens
transcript PP1S169_73V6.2
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162203186|gb|FC379283.1|FC379283
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|162175454|gb|FC350924.1|FC350924
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|37832005|gb|BJ590017.1|BJ590017
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|37822469|gb|BJ580535.1|BJ580535
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|162183680|gb|FC359908.1|FC359908
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|162198129|gb|FC373079.1|FC373079
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|37827542|gb|BJ585554.1|BJ585554
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|162198130|gb|FC373080.1|FC373080
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAANACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|37829602|gb|BJ587614.1|BJ587614
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|37834715|gb|BJ592727.1|BJ592727
EST:     TAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|37828539|gb|BJ586551.1|BJ586551
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|67720614|gb|BJ970873.1|BJ970873
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGAATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|162266558|gb|FC442789.1|FC442789
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|162160838|gb|FC337660.1|FC337660
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|208365406|gb|DC950873.1|DC950873
EST:     TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: TGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
EST: gi|37823750|gb|BJ581816.1|BJ581816
EST:     CTGTGGGATCTTGCTGCGG                         GTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG
genomic: CTGTGGGATCTTGCTGCGGgtatgtaatc ... atttacacagGTAAAACTATGTCGACTTTAACATTTCACAAGAAGTCTGTGAGAGCATTGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GACCCACAAGTTGTAACAGGATCACATGATACCACAATCAAGCTGTGGGATCTTGCTGCGGgtatgtaatcaatcccttcctgatgtatctaagcccgtttgaagttagtagaattagttttcatctgctatgctaccagtgttggagcttaagttttccacttagcaaagattaaaagttactgaaatgagtctttgttaagcaccttatttttttcatgttatcgtgcaatttacacag

- - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - -  TGCTGC