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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgctttacaccaatagtgtgtgtgcgagtcgcacttgttattgtctgtatctaccagccacactgtaacaagctctatcagatgctcatggacgtga...

Basic information

species Physcomitrella patens
transcript PP1S160_44V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208364951|gb|DC947093.1|DC947093
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|18333054|gb|BJ165068.1|BJ165068
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208357273|gb|DC949903.1|DC949903
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGGCATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208372747|gb|DC952634.1|DC952634
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|67724453|gb|BJ974712.1|BJ974712
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|37824997|gb|BJ583063.1|BJ583063
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|67727140|gb|BJ977399.1|BJ977399
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|37828592|gb|BJ586604.1|BJ586604
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|22132646|gb|BQ827270.1|BQ827270
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|162173639|gb|FC349607.1|FC349607
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208385682|gb|DC952843.1|DC952843
EST:     GTGATCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|18335246|gb|BJ167264.1|BJ167264
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|15320244|gb|BI488011.1|BI488011
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|162166658|gb|FC343550.1|FC343550
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208375552|gb|DC945111.1|DC945111
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|37838686|gb|BJ596694.1|BJ596694
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208362030|gb|DC950479.1|DC950479
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|40781593|gb|AJ583523.1|AJ583523
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|162177571|gb|FC352429.1|FC352429
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|162231216|gb|FC407003.1|FC407003
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|37837476|gb|BJ595484.1|BJ595484
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208389390|gb|DC953228.1|DC953228
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|162177570|gb|FC352428.1|FC352428
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|22492620|gb|BU052543.1|BU052543
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208362110|gb|DC943523.1|DC943523
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|67728109|gb|BJ978368.1|BJ978368
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208367940|gb|DC955375.1|DC955375
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208353436|gb|DC922490.1|DC922490
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|162258772|gb|FC434571.1|FC434571
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208388349|gb|DC949321.1|DC949321
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
EST: gi|208368091|gb|DC947651.1|DC947651
EST:     GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG                         GAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT
genomic: GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 16 (upstream exon), 25 (downstream exon)
Score: 4

GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGgtatgcttta ... gtgcaaacagGAATCTGTGAATGCCCACGGTGGTGCAGTTTCTCTTGGACATCCCCTTGGTTGCAGTGGAGCTCGTATTCTCGTCACACTGCTCGGGGTTCTGAAGGAGA




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