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CTCAGATGAACCAGACGCTGCTCAAGATGACGCTAAAGCTTTCTTGTTTCAAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttctactactattcattagcgtcgaagttcaacgtggatctttttgcgcactactcgtttatttgatcataattcaatgttctcgcagacactcc...
species | Physcomitrella patens |
transcript | PP1S15_298V6.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTAT GAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAGEST: gi|162177638|gb|FC353224.1|FC353224
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTAT GAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAGEST: gi|162151227|gb|FC327187.1|FC327187
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTAT GAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAGEST: gi|162150207|gb|FC326292.1|FC326292
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTAT GAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAGEST: gi|18363604|gb|BJ195676.1|BJ195676
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTANAGCTTTAT GAACCANGTGAAAGGCCATTTGACTTGGCEST: gi|161984098|gb|EE296401.1|EE296401
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGC
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTAT GAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAGEST: gi|162270704|gb|FC446317.1|FC446317
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
EST: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTAT GAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
genomic: AAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttcta ... ggttttgcagGAACCAAGTGAAAGGCCATTTGACTTGGCAGCAGTTCCTAAAGACACAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTCAGATGAACCAGACGCTGCTCAAGATGACGCTAAAGCTTTCTTGTTTCAAGATTTGGACGTGCCCTTGGAGAATTTGGAAAAGAGTTTAGAGCTTTATgtaagttctactactattcattagcgtcgaagttcaacgtggatctttttgcgcactactcgtttatttgatcataattcaatgttctcgcagacactcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT