Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTGAAGTTGATGCAGGCGCTGGATGTCCTTGGTCTCAGCGTTGTCCACGCTAACATCACCACATTCCGTGGCTTAGTCCTCAATGTTTTCAATGCCGAGgtaattcacatacaccaaaatttcaattcgaaaaagtttagccatttatacattccaagagtgattgatttcaccctctaacctctgtttaatgtgcttatgcag

Basic information

species Physcomitrella patens
transcript PP1S159_28V6.1
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S159_28V6.1 (Physcomitrella patens), 5'ss of exon 11
lower sequence: EFJ06925 (Selaginella moellendorffii), 5'ss of exon 8
CGTGAAGTTGATGCAGGCGCTGGATGTCCTTGGTCTCAGCGTTGTCCACGCTAACATCACCACATTCCGTGGCTTAGTCCTCAATGTTTTCAATGCCGAGgtaattcacatacaccaaaa--tttcaattcgaaaaagtttagccatttatacattccaagagtgattgatttcaccctctaacctctgtttaatgtgcttatgcag
 |||||  |||||||||| |||||||  || ||| |   |||  | || || || |||||||| || || || |||||||| || |||||||||||||||||||      | |         ||||  ||  |   |||  ||   |||    | |  |                                                
TGTGAAACTGATGCAGGCACTGGATGCGCTGGGTTTGGACGTCCTGCATGCAAATATCACCACGTTTCGAGGATTAGTCCTTAACGTTTTCAATGCCGAGgtaacgtttttgctttggttcttttcgtttttatcgagtgaagt--tttggctactgtag-----------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208361200|gb|DC954306.1|DC954306
EST:     CTAACATCACCACATTCCGTGGCTTAGTCCTCAATGTTTTCAATGCCGAG                         GTTAGAGACAAGGAGCTTGTCGGTGTGGAGCAAATGCGCGACACGTTGTTT
genomic: CTAACATCACCACATTCCGTGGCTTAGTCCTCAATGTTTTCAATGCCGAGgtaattcaca ... gcttatgcagGTTAGAGACAAGGAGCTTGTCGGTGTGGAGCAAATGCGCGACACGTTGTTT
EST: gi|37827378|gb|BJ585390.1|BJ585390
EST:     CTAACATCACCACATTCCGTGGCTTAGTCCTCAATGTTTTCAATGCCGAG                         GTTAGAGACAAGGAGCTTGTCGGTGTGGAGCAAATGCGCGACACGTTGTTT
genomic: CTAACATCACCACATTCCGTGGCTTAGTCCTCAATGTTTTCAATGCCGAGgtaattcaca ... gcttatgcagGTTAGAGACAAGGAGCTTGTCGGTGTGGAGCAAATGCGCGACACGTTGTTT