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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CAAGTGTTGAAGGGACAGCAAGTGGCCGCAGTCGGTGCTACTGGACGTGCTACAGGCCCACATTTACACTTCGAAGgtgggcatcagatgaaaatgtttttgcaaatttgaacactaaaattgatgacgctaagcatcactgcttgttttgacttcgctttcggtgtatgcag

Basic information

species Physcomitrella patens
transcript PP1S100_112V6.1
intron # 11
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162157351|gb|FC333466.1|FC333466
EST:     CGCAGTCGGTGCTACTGGACGTGCTACAGGCCCACATTTACACTTCGAAG                         TTCGAAAGAATGGAGAAGCACTTGACCCATTGAAATGGGTCCGTTTGTGAC
genomic: CGCAGTCGGTGCTACTGGACGTGCTACAGGCCCACATTTACACTTCGAAGgtgggcatca ... gtgtatgcagTTCGAAAGAATGGAGAAGCACTTGACCCATTGAAATGGGTCCGTTTGTGAC
EST: gi|37832438|gb|BJ590450.1|BJ590450
EST:     CGCAGTCGGTGCTACTGGACGTGCTACAGGCCCACATTTACACTTCGAAG                         TTCGAAAGAATGGAGAAGCACTTGACCCATTGAAATGGGTCCGTTTGTGAC
genomic: CGCAGTCGGTGCTACTGGACGTGCTACAGGCCCACATTTACACTTCGAAGgtgggcatca ... gtgtatgcagTTCGAAAGAATGGAGAAGCACTTGACCCATTGAAATGGGTCCGTTTGTGAC
EST: gi|162274326|gb|FC450294.1|FC450294
EST:     CGCAGTCGGTGCTACTGGACGTGCTACAGGCCCACATTTACACTTCGAAG                         TTCGAAAGAATGGAGAAGCACTTGACCCATTGAAATGGGTCCGTTTGTGAC
genomic: CGCAGTCGGTGCTACTGGACGTGCTACAGGCCCACATTTACACTTCGAAGgtgggcatca ... gtgtatgcagTTCGAAAGAATGGAGAAGCACTTGACCCATTGAAATGGGTCCGTTTGTGAC
EST: gi|67725072|gb|BJ975331.1|BJ975331
EST:     CGCAGTCGGTGCTACTGGACGTGCTACAGGCCCACATTTACACTTCGAAG                         TTCGAAAGAATGGAGAAGCACTTGACCCATTGAAATGGGTCCGTTTGTGAC
genomic: CGCAGTCGGTGCTACTGGACGTGCTACAGGCCCACATTTACACTTCGAAGgtgggcatca ... gtgtatgcagTTCGAAAGAATGGAGAAGCACTTGACCCATTGAAATGGGTCCGTTTGTGAC