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ATCTGCAGAGGTTACTTTGAGGAGCACATACTCCCAAATCAGGGCTTGCTGCGTTCCGAGGAGCAATTCGATAAAGTATTGGAACTAGTGCCAGATGAATgtaagtggaattcgatcctgctgtggattggtttcaaaattctgttcaattctattgcatgcttacaaattggcgaagcaacacatttcatgataagagg...
species | Physcomitrella patens |
transcript | PP1S90_95V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GCGTTCCGAGGAGCAATTCGATAAAGTATTGGAACTAGTGCCAGATGAAT CAGCTGTAAGGACTCAGATGCGGGATAGATGGAAACGTGCCTCAACTTCCAEST: gi|18341360|gb|BJ173395.1|BJ173395
genomic: GCGTTCCGAGGAGCAATTCGATAAAGTATTGGAACTAGTGCCAGATGAATgtaagtggaa ... aattcattagCAGCTGTAAGGACTCAGATGCGGGATAGATGGAAACGTGCCTCAACTTCCA
EST: GCGTTCCGAGGAGCAATTCGATAAAGTATTGGAACTAGTGCCAGATGAAT CAGCTGTAAGGACTCAGATGCGGGATAGATGGAAACGTGCCTCAACTTCCAEST: gi|18337995|gb|BJ170019.1|BJ170019
genomic: GCGTTCCGAGGAGCAATTCGATAAAGTATTGGAACTAGTGCCAGATGAATgtaagtggaa ... aattcattagCAGCTGTAAGGACTCAGATGCGGGATAGATGGAAACGTGCCTCAACTTCCA
EST: GCGTTCCGAGGAGCAATTCGATAAAGTATTGGAACTAGTGCCAGATGAAT CAGCTGTAAGGACTCAGATGCGGGATAGATGGAAACGTGCCTCAACTTCCAEST: gi|162191193|gb|FC367871.1|FC367871
genomic: GCGTTCCGAGGAGCAATTCGATAAAGTATTGGAACTAGTGCCAGATGAATgtaagtggaa ... aattcattagCAGCTGTAAGGACTCAGATGCGGGATAGATGGAAACGTGCCTCAACTTCCA
EST: GCGTTCCGAGGAGCAATTCGATAAAGTATTGGAACTAGTGCCAGATGAAT ---CTGTAAGGACTCAGATGCGGGATAGATGGAAACGTGCCTCAACTTCCA
genomic: GCGTTCCGAGGAGCAATTCGATAAAGTATTGGAACTAGTGCCAGATGAATgtaagtggaa ... aattcattagCAGCTGTAAGGACTCAGATGCGGGATAGATGGAAACGTGCCTCAACTTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGCAGAGGTTACTTTGAGGAGCACATACTCCCAAATCAGGGCTTGCTGCGTTCCGAGGAGCAATTCGATAAAGTATTGGAACTAGTGCCAGATGAATgtaagtggaattcgatcctgctgtggattggtttcaaaattctgttcaattctattgcatgcttacaaattggcgaagcaacacatttcatgataagagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG