1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGTAGGTGACATTGCAACATTCCCAATGAAGATGTATGGTGATAGCCGGCGAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatcccgtttgcttgtacttcgacgatcttttgaatgaagaggttcagtggtttgtgacttctctatgaggataattttttatctgatagcttgtgaatcaacaatttgggcag
species | Physcomitrella patens |
transcript | PP1S90_28V6.4 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|162166733|gb|FC342702.1|FC342702
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|162178357|gb|FC355179.1|FC355179
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|37828254|gb|BJ586266.1|BJ586266
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|37833129|gb|BJ591141.1|BJ591141
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: AGTGGAGCATGTGGACCATGCAAGGAAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|67696822|gb|BJ957055.1|BJ957055
genomic: AGTGGAGCATGTGGACCATGCAAGG-AAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|162225063|gb|FC401687.1|FC401687
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|37838802|gb|BJ596810.1|BJ596810
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|37852518|gb|BJ610526.1|BJ610526
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|18341461|gb|BJ173496.1|BJ173496
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|37836214|gb|BJ594222.1|BJ594222
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|162181159|gb|FC357604.1|FC357604
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|208373118|gb|DC948883.1|DC948883
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|162221160|gb|FC397801.1|FC397801
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|208387453|gb|DC949238.1|DC949238
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|208392192|gb|DC957271.1|DC957271
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|162278697|gb|FC454807.1|FC454807
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|37850756|gb|BJ608764.1|BJ608764
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|162178358|gb|FC355180.1|FC355180
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGEST: gi|37842364|gb|BJ600372.1|BJ600372
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTG
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|18340059|gb|BJ172087.1|BJ172087
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|162237032|gb|FC413191.1|FC413191
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|162172811|gb|FC348400.1|FC348400
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATTTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|162181158|gb|FC357603.1|FC357603
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|37830452|gb|BJ588464.1|BJ588464
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|37841480|gb|BJ599488.1|BJ599488
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|208378994|gb|DC922840.1|DC922840
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCANGCAAGGAAATCTNCCATGCAGGCTGTTCAG GCGATCAAAGCCGNTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|162221161|gb|FC397802.1|FC397802
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|37824881|gb|BJ582947.1|BJ582947
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTCEST: gi|208395391|gb|DC919967.1|DC919967
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
EST: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAG GCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
genomic: GAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatc ... atttgggcagGCGATCAAAGCCGCTGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTAGGTGACATTGCAACATTCCCAATGAAGATGTATGGTGATAGCCGGCGAGTGGAGCATGTGGACCATGCAAGGAAATCTGCCATGCAGGCTGTTCAGgtatgttatcccgtttgcttgtacttcgacgatcttttgaatgaagaggttcagtggtttgtgacttctctatgaggataattttttatctgatagcttgtgaatcaacaatttgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT