1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GAAGCCGCGAAGTATCAAAGAGAGGAAAGTAAGTTGCAGGACAAGCATGGAGCTTCTGGTCAGAGGAACACATACTCTCAGAACTCTAAATCTCTAGATGgtaactacaaattttctgctttaaaaccctaacgctttcaagttttgggacgtcttcattaatgccctctgcacaccttggttgtttcgaacttgatatt...
species | Physcomitrella patens |
transcript | PP1S87_157V6.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AGCTTCTGGTCAGAGGAACACATACTCTCAGAACTCTAAATCTCTAGATG GTCCTGTTGGAAGAGCAGGTAATCCAACAAGTTTCATGGGCCTTTCCAACAEST: gi|162175518|gb|FC351768.1|FC351768
genomic: AGCTTCTGGTCAGAGGAACACATACTCTCAGAACTCTAAATCTCTAGATGgtaactacaa ... ctcattgcagGTCCTGTTGGAAGAGCAGGTAATCCAACAAGTTTCATGGGCCTTTCCAACA
EST: GTCAGAGGAACACATACTCTCAGAACTCTAAATCTCTAGATG GTCCTGTTGGAAGAGCAGGTAATCCAACAAGTTTCATGGGCCTTTCCAACAEST: gi|208392138|gb|DC957245.1|DC957245
genomic: GTCAGAGGAACACATACTCTCAGAACTCTAAATCTCTAGATGgtaactacaa ... ctcattgcagGTCCTGTTGGAAGAGCAGGTAATCCAACAAGTTTCATGGGCCTTTCCAACA
EST: AGCTTCTGGTCAGAGGAACACATACTCTCAGAACTCTAAATCTCTAGATG GTCCTGTTGGAAGAGCAGGTAATCCAACAAGTTTCATGGGCCTTTCCAACAEST: gi|37824784|gb|BJ582850.1|BJ582850
genomic: AGCTTCTGGTCAGAGGAACACATACTCTCAGAACTCTAAATCTCTAGATGgtaactacaa ... ctcattgcagGTCCTGTTGGAAGAGCAGGTAATCCAACAAGTTTCATGGGCCTTTCCAACA
EST: AATCTCTAGATG GTCCTGTTGGAAGAGCAGGTAATCCAACAAGTTTCATGGGCCTTTCCAACAEST: gi|162175519|gb|FC351769.1|FC351769
genomic: AATCTCTAGATGgtaactacaa ... ctcattgcagGTCCTGTTGGAAGAGCAGGTAATCCAACAAGTTTCATGGGCCTTTCCAACA
EST: AGCTTCTGGTCAGAGGAACACATACTCTCAGAACTCTAAATCTCTAGATG GTCCTGTTGGAAGAGCAGGTAATCCAACAAGTTTCATGGGCCTTTCCAACAEST: gi|18350707|gb|BJ182758.1|BJ182758
genomic: AGCTTCTGGTCAGAGGAACACATACTCTCAGAACTCTAAATCTCTAGATGgtaactacaa ... ctcattgcagGTCCTGTTGGAAGAGCAGGTAATCCAACAAGTTTCATGGGCCTTTCCAACA
EST: AGCTTCTGGTCAGAGGAACACATACTCTCAGAACTCTAAATCTCTAGATG GTCCTGTTGGAAGAGCAGGTAATCCAACAAGTTTCATGGGCCTTTCCAACA
genomic: AGCTTCTGGTCAGAGGAACACATACTCTCAGAACTCTAAATCTCTAGATGgtaactacaa ... ctcattgcagGTCCTGTTGGAAGAGCAGGTAATCCAACAAGTTTCATGGGCCTTTCCAACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCCGCGAAGTATCAAAGAGAGGAAAGTAAGTTGCAGGACAAGCATGGAGCTTCTGGTCAGAGGAACACATACTCTCAGAACTCTAAATCTCTAGATGgtaactacaaattttctgctttaaaaccctaacgctttcaagttttgggacgtcttcattaatgccctctgcacaccttggttgtttcgaacttgatatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA