1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATCCTCATCCTGGCACGGGACGTGCACCTAGCAAACGCGGTGTTGGTGTTGCGTTTGGATCAGATGTCACTCACCGTTTCTTGGAAGACAACAATTTAGgtatgccttggtcattatttagagttttttttggctgttcatttacagagctttcttgatcgtacatgcggttttgattcagcagtagctgctgctgtgt...
species | Physcomitrella patens |
transcript | PP1S87_139V6.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGCGTTTGGATCAGATGTCACTCACCGTTTCTTGGAAGACAACAATTTAG AGCTAGTGGTGCGGTCCCATGAGGTCAAGGATGAGGGCTATGAAGTGGACCEST: gi|208390866|gb|DC945897.1|DC945897
genomic: TGCGTTTGGATCAGATGTCACTCACCGTTTCTTGGAAGACAACAATTTAGgtatgccttg ... tctgtaacagAGCTAGTGGTGCGGTCCCATGAGGTCAAGGATGAGGGCTATGAAGTGGACC
EST: TGCGTTTGGATCAGATGTCACTCACCGTTTCTTGGAAGACAACAATTTAG AGCTAGTGGTGCGGTCCCATGAGGTCAAGGATGAGGGCTATGAAGTGGACCEST: gi|22132216|gb|BQ827040.1|BQ827040
genomic: TGCGTTTGGATCAGATGTCACTCACCGTTTCTTGGAAGACAACAATTTAGgtatgccttg ... tctgtaacagAGCTAGTGGTGCGGTCCCATGAGGTCAAGGATGAGGGCTATGAAGTGGACC
EST: TGCGTTTGGATCAGATGTCACTCACCGTTTCTTGGAAGACAACAATTTAG AGCTAGTGGTGCGGTCCCATGAGGTCAAGGATGAGGGCTATGAAGTGGACC
genomic: TGCGTTTGGATCAGATGTCACTCACCGTTTCTTGGAAGACAACAATTTAGgtatgccttg ... tctgtaacagAGCTAGTGGTGCGGTCCCATGAGGTCAAGGATGAGGGCTATGAAGTGGACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATCCTCATCCTGGCACGGGACGTGCACCTAGCAAACGCGGTGTTGGTGTTGCGTTTGGATCAGATGTCACTCACCGTTTCTTGGAAGACAACAATTTAGgtatgccttggtcattatttagagttttttttggctgttcatttacagagctttcttgatcgtacatgcggttttgattcagcagtagctgctgctgtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA