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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACAGTTCTGCTTCAGCAGACGAAACAAACAATGGTGGTCATGCAGTAGGAATGAATGGTTCTGGTGATTCACTTTCTGGACTGCAATCGCTTGGGCAAGgtagttctcattttccctcaacagtgttttgttgtctcttgttgtctctcttcccttttcatttagcataatcaaggatatgaatattcttgattaggagagttattgctgggtcactgaaacaaatggatttagcaccctcttccgatcaatgaaagagactcattactatattgtttgattgcctccttccag

Basic information

species Physcomitrella patens
transcript PP1S84_50V6.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162277159|gb|FC453381.1|FC453381
EST:     AATGAATGGTTCTGGTGATTCACTTTCTGGACTGCAATCGCTTGGGCAAG                         ATTCTAAATCAGAAGATCGTCCAGAAGGTTCTGCTGGGGATGGACCAGAAA
genomic: AATGAATGGTTCTGGTGATTCACTTTCTGGACTGCAATCGCTTGGGCAAGgtagttctca ... ctccttccagATTCTAAATCAGAAGATCGTCCAGAAGGTTCTGCTGGGGATGGACCAGAAA
EST: gi|162152881|gb|FC328975.1|FC328975
EST:     AATGAATGGTTCTGGTGATTCACTTTCTGGACTGCAATCGCTTGNGCAAG                         ATTCTAAATCAGAAGATCGTCC
genomic: AATGAATGGTTCTGGTGATTCACTTTCTGGACTGCAATCGCTTGGGCAAGgtagttctca ... ctccttccagATTCTAAATCAGAAGATCGTCC
EST: gi|162261365|gb|FC437798.1|FC437798
EST:     AATGAATGGTTCTGGTGATTCACTTTCTGGACTGCAATCGCTTGGGCAAG                         ATTCTAAATCAGAAGATCGTCCAGAAGGTTCTGCTGGGGATGGACCAGAAA
genomic: AATGAATGGTTCTGGTGATTCACTTTCTGGACTGCAATCGCTTGGGCAAGgtagttctca ... ctccttccagATTCTAAATCAGAAGATCGTCCAGAAGGTTCTGCTGGGGATGGACCAGAAA