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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTAGTGGAGCATGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAGgtgcgacacaagccatataccgtgtcgaggttaattactagcagtatggaaacagatcagctcacctcattcccatttgagcgtcagggataatcatgaaacttgctaattgtgcgtttcctggggcttggcaacaatttcag

Basic information

species Physcomitrella patens
transcript PP1S83_234V6.4
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162247261|gb|FC423059.1|FC423059
EST:     CTGAAAAACAAGTCATCACGCCAACAG                         GGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
genomic: CTGAAAAACAAGTCATCACGCCAACAGgtgcgacaca ... acaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
EST: gi|162155634|gb|FC331559.1|FC331559
EST:     TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAG                         GGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
genomic: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAGgtgcgacaca ... acaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
EST: gi|162250016|gb|FC427117.1|FC427117
EST:     TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAG                         GGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
genomic: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAGgtgcgacaca ... acaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
EST: gi|162159567|gb|FC335745.1|FC335745
EST:     TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAG                         GGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
genomic: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAGgtgcgacaca ... acaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
EST: gi|162250017|gb|FC427118.1|FC427118
EST:     TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAG                         GGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
genomic: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAGgtgcgacaca ... acaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
EST: gi|162247262|gb|FC423060.1|FC423060
EST:     TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAG                         GGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA
genomic: TGGACTAGGTCATTTGCCGTTCACTGAAAAACAAGTCATCACGCCAACAGgtgcgacaca ... acaatttcagGGTCAATATATGTTGGAGTAGACTTCTGCAAACAACTTTGTGGTGTCTCCA