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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTACAGGAGGTTGATCCATGTGATGTTTTAACCGATGAGGATATTCGAACTGCCATTCAAAATGCAACAGGACCCAAAAATGTGCTCTTTGTGCCTGAGgtacaattcaaaacggtattacccttgcagtggctgaaatcctggtgtaatgtcaatctgaacagccgtagagctaagatcaattatttccttgggcaga...

Basic information

species Physcomitrella patens
transcript PP1S82_15V6.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S82_15V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: AT2G14120.1 (Arabidopsis thaliana), 5'ss of exon 10
GGTACAGGAGGTTGATCCATGTGATGTTTTAACCGATGAGGATATTCGAACTGCCATTCAAAATGCAACAGGACCCAAAAATGTGCTCTTTGTGCCTGAGgtacaattcaaaacggtattacccttgcagtggctgaaatcctggtgtaatgtcaatctgaacagccgtagagctaagatcaattatttccttgggcaga--------------------------------------
       ||||||||||||||||| |  ||||| | ||| |||||||| ||||| || ||||||||||| || |||| |  ||   | ||||| || || |||   ||    |      ||  | ||  |  ||     |     | |    ||  ||   | |    |   |||    |   ||| ||     |  |                                        
-------GAGGTTGATCCATGTGAAGACTTAACAGCTGATGATATTCGGACTGCAATACAAAATGCAACTGGTCCCAGATCTGCATTATTTGTTCCAGATgtaggtttatctatatccctaagcatgtgggagcatttttttgcttatctgttctttccacatacttattttgcttgagttttttacttttacagcaactctgattagtatctcttgctttcattctcatctgcatag

upper sequence: PP1S82_15V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: Vv03s0038g00970.t01 (Vitis vinifera), 5'ss of exon 11
GGTACAGGAGGTTGATCCATGTGATGTTTTAACCGATGAGGATATTCGAACTGCCATTCAAAATGCAACAGGACCCAAAAATGTGCTCTTTGTGCCTGAGgtacaattcaaaacggtattacccttgcagtggctgaaatcctggtgtaatgtcaatctgaac--agccgtagagctaagatcaatt--atttccttgggcaga-----------------------------------------------------------------
       ||||| ||||||||||| | ||| || ||||| || ||||||||||| ||||| |||||||| || || | |  ||   | |||||||| || |||    | | |  | | ||    || |  |  || |  ||   | ||||    | | ||||   |    || |  | | ||   ||     |  ||  |||                                                                   
-------GAGGTGGATCCATGTGAGGATTTGACTGATGATGACATTCGAACTGCAATTCAGAATGCAACCGGCCCTAGATCTGCATTATTTGTGCCAGAAgtatgtcttatagggctcttgttttttc--ttcctaagttctctgagtaa----attttgaatttatttctaaacttcaaattgttttgccattatttagcatgcgattttccttttttgtaatctctatcttaacatataattagtgctaaccccaaaatatcttcag

upper sequence: PP1S82_15V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: EFJ15047 (Selaginella moellendorffii), 5'ss of exon 10
GGTACAGGAGGTTGATCCATGTGATGTTTTAACCGATGAGGATATTCGAACTGCCATTCAAAATGCAACAGGACCCAAAAATGTGCTCTTTGTGCCTGAGgtacaattcaaaacggtattacccttgcagtggctgaaatcctggtgtaatgtcaatctgaacagccgtagagctaagatcaattatttccttgggcaga
       ||||||||||||||||||| | | || ||||| ||||| ||||| |||||||||||||| || || || |||||||| || |||||||| |||||||| |    |      |     | |  ||   |   |   |  |  |                                                   
-------GAGGTTGATCCATGTGATGATCTGACTGATGAAGATATACGAACAGCCATTCAAAATGCCACTGGTCCAAAAAATGTTCTGTTTGTGCCCGAGgtacactattcagtatcttgtttttcgttgtcattcggagtttcttccag--------------------------------------------------

upper sequence: PP1S82_15V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: EFJ37641 (Selaginella moellendorffii), 5'ss of exon 10
GGTACAGGAGGTTGATCCATGTGATGTTTTAACCGATGAGGATATTCGAACTGCCATTCAAAATGCAACAGGACCCAAAAATGTGCTCTTTGTGCCTGAGgtacaattcaaaacggtattacccttgcagtggctgaaatcctggtgtaatgtcaatctgaacagccgtagagctaagatcaattatttccttgggcaga
       ||||||||||||||||| | | | || ||||| ||||| ||||| |||||||||||||| || || || |||||||| || |||||||| |||||||  |   |  | ||||     ||   || |          || ||  |  ||                                             
-------GAGGTTGATCCATGTGACGATCTGACTGATGAAGATATCCGAACAGCCATTCAAAATGCCACTGGTCCAAAAAATGTTCTGTTTGTGCCCGAGgtacgct---attcagtatcttgtttttcgttgtca----ttcggagtttttccag--------------------------------------------