1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTCAAGGCTCGCACAAAGGGTGAAGCTGGTGCTGCTAAAACCCTATGCATGCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttttttgtcatctggaagcttttggtggatctcttgtatgaaggataagctctgttgcaacttgaatctggcaataactgacttctttgtgcctggtcaccttttcag
species | Physcomitrella patens |
transcript | PP1S7_175V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|162238449|gb|FC414587.1|FC414587
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACTCACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|37829899|gb|BJ587911.1|BJ587911
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAGG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|162173416|gb|FC349795.1|FC349795
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTGGAACTCACTTCCTGAAG GAACCAAGTGTTTGGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|162224268|gb|FC399514.1|FC399514
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACTCACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|37841561|gb|BJ599569.1|BJ599569
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|67699791|gb|BJ960024.1|BJ960024
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|37823266|gb|BJ581332.1|BJ581332
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|37828261|gb|BJ586273.1|BJ586273
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|162168455|gb|FC344119.1|FC344119
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACTCACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|208351458|gb|DC926304.1|DC926304
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|162250112|gb|FC427421.1|FC427421
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACTCACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|162258850|gb|FC434857.1|FC434857
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|162237814|gb|FC413923.1|FC413923
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACTCACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|37827562|gb|BJ585574.1|BJ585574
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|162158159|gb|FC333954.1|FC333954
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACTCACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|37825576|gb|BJ583642.1|BJ583642
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|37826374|gb|BJ584386.1|BJ584386
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|37853519|gb|BJ611527.1|BJ611527
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|162224254|gb|FC399513.1|FC399513
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACTCACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|162264775|gb|FC440342.1|FC440342
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGGEST: gi|162215795|gb|FC390860.1|FC390860
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
EST: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACTCACTTCCTGAAG GAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
genomic: GCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttt ... accttttcagGAACCAAGTGTTTCGTATCAGGCAAACCTGCGAAGAAATGGGCTTTGTGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTCAAGGCTCGCACAAAGGGTGAAGCTGGTGCTGCTAAAACCCTATGCATGCCATTCGAGCAGGATACCCTTCCAATGGTGTCGAACACACTTCCTGAAGgtaacatttttttgtcatctggaagcttttggtggatctcttgtatgaaggataagctctgttgcaacttgaatctggcaataactgacttctttgtgcctggtcaccttttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG