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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGAAATGAGACCTCTCCTGAAGACATGAGCTTGCGTCTCGGAAACCAGGCTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtgccttgcctttctacctttactgtgcatccatttttgtgcgattgattgaaggctttatagtaagtacttgtttgcatggcagcagatgta...

Basic information

species Physcomitrella patens
transcript PP1S79_254V6.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162158020|gb|FC334954.1|FC334954
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37841176|gb|BJ599184.1|BJ599184
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|162269549|gb|FC445105.1|FC445105
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37836542|gb|BJ594550.1|BJ594550
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|208381754|gb|DC928417.1|DC928417
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACNTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|208354680|gb|DC918706.1|DC918706
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|208347734|gb|DC925607.1|DC925607
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37849158|gb|BJ607166.1|BJ607166
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|208366175|gb|DC955276.1|DC955276
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|162238634|gb|FC418997.1|FC418997
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37833353|gb|BJ591365.1|BJ591365
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37845130|gb|BJ603138.1|BJ603138
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37850186|gb|BJ608194.1|BJ608194
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37844185|gb|BJ602193.1|BJ602193
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|7648262|gb|AW739245.1|AW739245
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37843376|gb|BJ601384.1|BJ601384
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37835860|gb|BJ593872.1|BJ593872
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37843420|gb|BJ601428.1|BJ601428
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|162192771|gb|FC369622.1|FC369622
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|67699119|gb|BJ959352.1|BJ959352
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37842304|gb|BJ600312.1|BJ600312
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37824362|gb|BJ582428.1|BJ582428
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|18340062|gb|BJ172090.1|BJ172090
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|208380520|gb|DC915422.1|DC915422
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|162276878|gb|FC452560.1|FC452560
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|208348822|gb|DC925894.1|DC925894
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|162191817|gb|FC367966.1|FC367966
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|208382347|gb|DC919335.1|DC919335
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37822622|gb|BJ580688.1|BJ580688
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|162164830|gb|FC341345.1|FC341345
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37834032|gb|BJ592044.1|BJ592044
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|162162092|gb|FC338883.1|FC338883
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|162195496|gb|FC369353.1|FC369353
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
EST: gi|37831038|gb|BJ589050.1|BJ589050
EST:     CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCG                         ACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT
genomic: CTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtg ... tgtggtgcagACCTGCTGCATGTTTACGATGCCCTTGACGAGGGACTCGCTGCTCTACTCT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
AGGAAATGAGACCTCTCCTGAAGACATGAGCTTGCGTCTCGGAAACCAGGCTGTTGTTTTCTTTACTGTGATCATTTTGCTTGTGGCTCTCCTCCTCTCGgttagtcgtgccttgcctttctacctttactgtgcatccatttttgtgcgattgattgaaggctttatagtaagtacttgtttgcatggcagcagatgta

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTCCTC