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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCGTACCTTTCATCGTGAAAGCTGGGAAGGCGTTGGATGCTAAAAAAGTCGAAATACGTGTGCAGTTTAGGGACACTCCTGGTGACATCTTTAATTgtatgatgttttatctctgtttttgctggggaattattgtttcttaaagcaagtgagcgaaatactaatttaatgatatcaatcctcaaagtttggcatattctcttgttcataatcagagagtcagggtgctgttactaatggatagacaactgtcagttgtgttcag

Basic information

species Physcomitrella patens
transcript PP1S73_244V6.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|100389659|gb|BY952465.1|BY952465
EST:     GTCGAGATACGTGTGCAGTTNNAGG-ACACTCCTGGTGACATCTTTAAT-                         GCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCG
genomic: GTCGAAATACGTGTGCAGTTT-AGGGACACTCCTGGTGACATCTTTAATTgtatgatgtt ... ttgtgttcagGCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCG
EST: gi|37841809|gb|BJ599817.1|BJ599817
EST:     AGTCGAAATACGTGTGCAGTTTAGGGACACTCCTGGTGACATCTTTAATT                         GCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCGTCTGCAACCAAAGGAGG
genomic: AGTCGAAATACGTGTGCAGTTTAGGGACACTCCTGGTGACATCTTTAATTgtatgatgtt ... ttgtgttcagGCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCGTCTGCAACCAAAGGAGG
EST: gi|208380876|gb|DC923358.1|DC923358
EST:     AGTCGAAATACGTGTGCAGTTTAGGGACACTCCTGGTGACATCTTTAATT                         GCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCGTCTGCAACCAAAGGAGG
genomic: AGTCGAAATACGTGTGCAGTTTAGGGACACTCCTGGTGACATCTTTAATTgtatgatgtt ... ttgtgttcagGCAAGAAGCTAGGCCGAAATGAGTTCGTAATGCGTCTGCAACCAAAGGAGG