1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' |
AGCTTTCTCGAGAAATCAACGAGTCATTTAGGCAGTCTGCTCAGGCACGGCTAAAGCTCCCCTCCGGAATTGAGATGAACGTTCACGTCCTCACTACTGGgtaataaacctttttagtcactcgaagctctcttgttgattcttttaatggtttgtgccatacttctggatgccttcttgtcaagctttatatgtgaagtattgtgtagtgattaacacttgcaatctgcattctatcttattattttttggtgttgtag
species | Physcomitrella patens |
transcript | PP1S70_181V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGAGATGAACGTTCACGTCCTCACTACTGG CTATTGGCCTACATATCCACCCATGGAGGTTAGGCTTCCACGCGAGCTCAAEST: gi|162162041|gb|FC338832.1|FC338832
genomic: TGAGATGAACGTTCACGTCCTCACTACTGGgtaataaacc ... ggtgttgtagCTATTGGCCTACATATCCACCCATGGAGGTTAGGCTTCCACGCGAGCTCAA
EST: AGATGAACGTTCACGTCCTCACTACTGG CTATTGGCCTACATATCCACCCATGGAGGTTAGGCTTCCACGCGAGCTCAAEST: gi|162178399|gb|FC354123.1|FC354123
genomic: AGATGAACGTTCACGTCCTCACTACTGGgtaataaacc ... ggtgttgtagCTATTGGCCTACATATCCACCCATGGAGGTTAGGCTTCCACGCGAGCTCAA
EST: CTAAAGCTCCCCTCCGGAATTGAGATGAACGTTCACGTCCTCACTACTGG CTATTGGCCTACATATCCACCCATGGAGGTTAGGCTTCCACGCGAGCTCAAEST: gi|100363718|gb|BY966526.1|BY966526
genomic: CTAAAGCTCCCCTCCGGAATTGAGATGAACGTTCACGTCCTCACTACTGGgtaataaacc ... ggtgttgtagCTATTGGCCTACATATCCACCCATGGAGGTTAGGCTTCCACGCGAGCTCAA
EST: CTAAAGCTCCCCTCCGGAATTGAGATGAACGTTCACGTCCTCACTACTGG CTATTGGCCTACATATCCACCCATGGGAGGT-AGGCTTCCACGCGAGCTCAEST: gi|162176874|gb|FC352849.1|FC352849
genomic: CTAAAGCTCCCCTCCGGAATTGAGATGAACGTTCACGTCCTCACTACTGGgtaataaacc ... ggtgttgtagCTATTGGCCTACATATCCACCCATGG-AGGTTAGGCTTCCACGCGAGCTCA
EST: CTAAAGCTCCCCTCCGGA-TTGAGATGAACGTTCACGTCCTCACTACTGG CTATTGGCCTACATATCCACCCAT
genomic: CTAAAGCTCCCCTCCGGAATTGAGATGAACGTTCACGTCCTCACTACTGGgtaataaacc ... ggtgttgtagCTATTGGCCTACATATCCACCCAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCTTTCTCGAGAAATCAACGAGTCATTTAGGCAGTCTGCTCAGGCACGGCTAAAGCTCCCCTCCGGAATTGAGATGAACGTTCACGTCCTCACTACTGGgtaataaacctttttagtcactcgaagctctcttgttgattcttttaatggtttgtgccatacttctggatgccttcttgtcaagctttatatgtgaagtattgtgtagtgattaacacttgcaatctgcattctatcttattattttttggtgttgtag
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