1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GATTCCAGACGGGGGGAGGTTTGAGTTGAGGCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTGgtaagtaccttcaatggtggcatatcttaagaattgtccataattttggatttcgaacctcattttcagcgttatatttgtctgtgcag
species | Physcomitrella patens |
transcript | PP1S6_256V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTG CGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTGEST: gi|22131417|gb|BQ826604.1|BQ826604
genomic: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTGgtaagtacct ... gtctgtgcagCGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTG
EST: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTG CGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTGEST: gi|18335875|gb|BJ167896.1|BJ167896
genomic: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTGgtaagtacct ... gtctgtgcagCGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTG
EST: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTG CGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTGEST: gi|67698809|gb|BJ959042.1|BJ959042
genomic: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTGgtaagtacct ... gtctgtgcagCGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTG
EST: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTG CGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTGEST: gi|22131423|gb|BQ826607.1|BQ826607
genomic: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTGgtaagtacct ... gtctgtgcagCGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTG
EST: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTG CGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTGEST: gi|37847388|gb|BJ605396.1|BJ605396
genomic: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTGgtaagtacct ... gtctgtgcagCGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTG
EST: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTG CGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTGEST: gi|67692498|gb|BJ952731.1|BJ952731
genomic: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTGgtaagtacct ... gtctgtgcagCGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTG
EST: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTG CGAGTGGTCTCCATGGCATTCGGGAGAATNTGCCAATACCACCGCGGTGTGEST: gi|18333330|gb|BJ165344.1|BJ165344
genomic: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTGgtaagtacct ... gtctgtgcagCGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTG
EST: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTG CGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTG
genomic: GCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTGgtaagtacct ... gtctgtgcagCGAGTGGTCTCCATGGCATTCGGGAGAATCTGCCAATACCACCGCGGTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GATTCCAGACGGGGGGAGGTTTGAGTTGAGGCTTGCAGACGGAGCTGTTAATCCGTACCTCTTGCAAGCTGCGATACTTGgtaagtaccttcaatggtggcatatcttaagaattgtccataattttggatttcgaacctcattttcagcgttatatttgtctgtgcag
- - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC