1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GTTCGGATCCAATGTGAGCCTGGAGGCAGGCTAGTGATTGCTGGGATGCCCGAGGATCCAGAAAATCCCTGGGGTGTGACTCCTTTCAGAAAAgtaagcttcgaaggcactgcgtctttgatgtcaacgatgtttgtgcaggtcctccagttacaagtcctgggtggtgtctacttatttcagttgataccac...
species | Physcomitrella patens |
transcript | PP1S66_226V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GGATGCCCGAGGATCCAGAAAATCCCTGGGGTGTGACTCCTTTCAGAAAA GTCATAAGTTTGCCTTCTCGAATTGACGCTCATCAAACATCAGCGGTGGTCEST: gi|162231558|gb|FC408203.1|FC408203
genomic: GGATGCCCGAGGATCCAGAAAATCCCTGGGGTGTGACTCCTTTCAGAAAAgtaagcttcg ... cttttctcagGTCATAAGTTTGCCTTCTCGAATTGACGCTCATCAAACATCAGCGGTGGTC
EST: GGATGCCCGAGGATCCAGAAAATCCCTGGGGTGTGACTCCTTTCAGAAAA GTCATAAGTTTGCCTTCTCGAATTGACGCTCATCAAACATCAGCGGTGGTCEST: gi|37837068|gb|BJ595076.1|BJ595076
genomic: GGATGCCCGAGGATCCAGAAAATCCCTGGGGTGTGACTCCTTTCAGAAAAgtaagcttcg ... cttttctcagGTCATAAGTTTGCCTTCTCGAATTGACGCTCATCAAACATCAGCGGTGGTC
EST: GGATGCCCGAGGATCCAGAAAATCCCTGGGGTGTGACTCCTTTCAGAAAA GTCATAAGTTTGCCTTCTCGAATTGACGCTCATCAAACATCAGCGGTGGTCEST: gi|162159600|gb|FC335778.1|FC335778
genomic: GGATGCCCGAGGATCCAGAAAATCCCTGGGGTGTGACTCCTTTCAGAAAAgtaagcttcg ... cttttctcagGTCATAAGTTTGCCTTCTCGAATTGACGCTCATCAAACATCAGCGGTGGTC
EST: GGATGCCCGAGGATCCAGAAAATCCNTGGGGTGTGACTCCTTTCAGAAAA GTCATAAGTTTGCCTTCTCGAATTGACGCTCATCAAACATCAGCGGTGGTCEST: gi|162153325|gb|FC329835.1|FC329835
genomic: GGATGCCCGAGGATCCAGAAAATCCCTGGGGTGTGACTCCTTTCAGAAAAgtaagcttcg ... cttttctcagGTCATAAGTTTGCCTTCTCGAATTGACGCTCATCAAACATCAGCGGTGGTC
EST: GGATGCCCGAGGATCCAGAAAATCCCTGGGGTGTGACTCCTTTCAGAAAA GTCATAAGTTTGCCTTCTCGAATTGACGCTCATCAAACATCAGCGGTGGTC
genomic: GGATGCCCGAGGATCCAGAAAATCCCTGGGGTGTGACTCCTTTCAGAAAAgtaagcttcg ... cttttctcagGTCATAAGTTTGCCTTCTCGAATTGACGCTCATCAAACATCAGCGGTGGTC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCGGATCCAATGTGAGCCTGGAGGCAGGCTAGTGATTGCTGGGATGCCCGAGGATCCAGAAAATCCCTGGGGTGTGACTCCTTTCAGAAAAgtaagcttcgaaggcactgcgtctttgatgtcaacgatgtttgtgcaggtcctccagttacaagtcctgggtggtgtctacttatttcagttgataccac
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT