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CATCCTCGGAATTGCTACTGCTGGCAATCTCTACATGAGTGAGAAAGCCCCCTGGTCTCTCTTCAAGGAAGGTGGCTCCGCTGCAGAGGATGCAGCTCAGgtaccatttacttcattgaggttgcaatagtgcaatgttcaatcatgttttcaaaatgacatgtatcctgatattcatcttcactcacttgaaaggatgt...
species | Physcomitrella patens |
transcript | PP1S66_139V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTCAAGGAAGGTGGCTCCGCTGCAGAGGATGCAGCTCAG GAGTTGACAGTAATTCTGGAAGCTGTTCGAATAATAGCTGTAGCCCTTTCAEST: gi|67691624|gb|BJ951857.1|BJ951857
genomic: TTCAAGGAAGGTGGCTCCGCTGCAGAGGATGCAGCTCAGgtaccattta ... ataactgcagGAGTTGACAGTAATTCTGGAAGCTGTTCGAATAATAGCTGTAGCCCTTTCA
EST: CCTGGTCTCTCTTCAAGGAAGGTGGCTCCGCTGCAGAGGATGCAGCTCAG GAGTTGACAGTAATTCTGGAAGCTGTTCGAATAATAGCTGTAGCCCTTTCAEST: gi|162184035|gb|FC359405.1|FC359405
genomic: CCTGGTCTCTCTTCAAGGAAGGTGGCTCCGCTGCAGAGGATGCAGCTCAGgtaccattta ... ataactgcagGAGTTGACAGTAATTCTGGAAGCTGTTCGAATAATAGCTGTAGCCCTTTCA
EST: CCTGGTCTCTCTTCAAGGAAGGTGGCTCCGCTGCAGAGGATGCAGCTCAG GAGTTGACAGTAATTCTGGAAGCTGTTCGAATAATAGCTGTAGCCCTTTCAEST: gi|67725192|gb|BJ975451.1|BJ975451
genomic: CCTGGTCTCTCTTCAAGGAAGGTGGCTCCGCTGCAGAGGATGCAGCTCAGgtaccattta ... ataactgcagGAGTTGACAGTAATTCTGGAAGCTGTTCGAATAATAGCTGTAGCCCTTTCA
EST: CCTGGTCTCTCTTCAAGGAAGGTGGCTCCGCTGCAGAGGATGCAGCTCAG GAGTTGACAGTAATTCTGGAAGCTGTTCGAATAATAGCTGTAGCCCTTTCA
genomic: CCTGGTCTCTCTTCAAGGAAGGTGGCTCCGCTGCAGAGGATGCAGCTCAGgtaccattta ... ataactgcagGAGTTGACAGTAATTCTGGAAGCTGTTCGAATAATAGCTGTAGCCCTTTCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATCCTCGGAATTGCTACTGCTGGCAATCTCTACATGAGTGAGAAAGCCCCCTGGTCTCTCTTCAAGGAAGGTGGCTCCGCTGCAGAGGATGCAGCTCAGgtaccatttacttcattgaggttgcaatagtgcaatgttcaatcatgttttcaaaatgacatgtatcctgatattcatcttcactcacttgaaaggatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA