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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgacctgcagcgtctgttctaaacctaactgaggagaatacagacgattagaatcagacttgagtcaacaacctcaatcagtggacgggtttaa...

Basic information

species Physcomitrella patens
transcript PP1S63_54V6.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: LOC_Os11g47330.1 (Oryza sativa), 5'ss of exon 7
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaag-ttgacctgcagcgtctgttctaaacctaactg--aggagaatacagacgattagaatcagacttgagtcaacaacctcaatcagtggacgggtttaa
||  |||| |||||||| || ||  |  |||| || ||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||    | |  |   |||| ||| | || |||    | || | ||  | | |   || | | || | |        ||  | | |   | |      
ACAAGTGCATCTCTGAAGTTCACCGTTTTGAACCCAAAGGGGCGCATCTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATATATGCTGATACAgtaagctttgagttcctcccttgttttaa-cttagctgttcagggatttcatgctactgtcatgaaa-ttaacttttttttttc--ttatttaccag------

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: LOC_Os11g47120.1 (Oryza sativa), 5'ss of exon 7
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaag-ttgacctgcagcgtctgttctaaacctaactg--aggagaatacagacgattagaatcagacttgagtcaacaacctcaatcagtggacggg---tttaa------------
||  |||| |||||||| || ||  |  |||| || ||||| ||||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||| ||    | |  |   |||| ||| | || |||      || | ||  | | |   || | | |    |       || | | |       ||   |||              
ACAAGTGCATCTCTGAAGTTCACCGTTTTGAACCCAAAGGGGCGCATCTGGACAATGGTTGCTGGAGGTGgtgccagtgtcatatatgctgatacagtaagctttgagttcctcccttgttttaa-cttagctgttcaaggatttcatgctactctcatgaaattaagtttttttttcttatttaccatgtcggagatttgggatatgcttcag

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: LOC_Os12g37870.1 (Oryza sativa), 5'ss of exon 7
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgacctgcagc---gtctgttctaaacctaactgaggagaatacagacgattagaatcagacttgagtcaacaacctcaatcagtggacgggtttaa
||  |  | || || ||||| ||  | ||||| ||||| || |||||||||||||||||||| || |||||||| |||||||| || |||||||||||||||  | ||  | |    ||| || ||     |  |  | ||  ||     |     | ||| ||    | ||| | |  ||                  
ACAAGCTCATCGCTCAAATTCACAGTCCTGAACCCGAAAGGGCGCATTTGGACAATGGTTGCAGGTGGTGGTGCTAGTGTCATATATGCTGATACTgtaagtctaactctatccagatcttttttaggttaagttttgaagtttatcagtgcc---attcacacactggacaatatcaccag-----------------

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GRMZM2G034083_T01 (Zea mays), 5'ss of exon 7
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagt-tga----cctgcagcgtctgttctaaacctaactgaggagaatacagacgattagaatcagacttgagt----caacaacctcaatcagtggacgggtttaa-----------------------------------------------------------------------
||  |||||||||||||||| ||| ||||||| || || || ||||| |||||||||||||| || |||||||| |||||||| ||||| || ||||||||| |||    | |||||   ||  |  ||   |   ||     | |     |  ||    | |   |||  |      |  |  |  ||   | || ||   | |                                                                       
ACAAGTGCTTCTCTGAAATTCACGGTACTGAACCCAAAAGGACGCATCTGGACAATGGTTGCAGGTGGTGGTGCTAGTGTCATATACGCAGACACTgtaagtctgaatttcatgcagaccctccttcaagtttctttgcacctattgatatcttttcatgttaactttggatgatatgatgaaatggatttctagaaggaccttatatttagtgataaaatgtgccatctgtgaggtgcatgttgcaataatctgatagttcctcttgcataccag

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GRMZM2G107082_T01 (Zea mays), 5'ss of exon 7
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaag--ttgacctgcagcgtctgttctaaacctaactgaggagaatacagacgattagaatcagacttgagtcaacaacctcaatcag-tggacgggtttaa--------
||  |||| |||||||| || ||| |  |||| ||||| || ||||| ||||| ||||| ||||| |||||||| ||||||||||| |||||||| |||||  |  |  || |    |   |  |||  |   | | |   || ||    |    | |||  ||  | | | |  ||   || |  |  |    |   |        
ACAAGTGCCTCTCTGAAGTTCACGGTTTTGAACCCGAAAGGTCGCATCTGGACCATGGTCGCTGGTGGTGGTGCTAGTGTCATTTATGCTGATACAgtaagcatcaatttgtatttacacataaaaagatt-ttcatgttgatgcatgttaaactattcac-ctatatttagctgccatgatgaaatcaattcctcccatttaccag

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA03G38810.3 (Glycine max), 5'ss of exon 8
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgacctgcagcgtctgt---tctaaacctaactgagga---gaatacagacg-attagaatcagacttgagtcaacaacct-caatcagtggacgggtttaa--------------------------
||  |||| ||  ||||||| || ||| |||||||||| || ||||| ||||||||||| || ||||||||||| ||||| ||||| |||||||| |||||||  | ||    ||   |   | |||  ||  || |  |   ||||| ||    |    || ||||  |   |    |   | |  | ||| |     |                              
ACAAGTGCATCATTGAAATTTACTATATTGAATCCGAAAGGACGCATATGGACAATGGTAGCAGGAGGTGGTGCAAGTGTAATTTATGCTGATACGgtaagttttcatgttttgtggatatatttaattctggctaaaaatatgaataaagggacacctcaaacagatatttttaggaagttttcttttagtaggtctttcggtgagttaatataccttttgtttactag

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA01G03530.1 (Glycine max), 5'ss of exon 9
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgacctgcagcgtctgttctaaacctaactgaggagaatacagacgattagaatcagacttgagtcaacaacctcaatcagtggacgggtttaa
||  |||| ||  | ||||| ||  |  |||| || |||||||| |||||||||||||| ||||| || ||||| ||||||||||| |||||||| ||  |||   ||      |     | |||   |       |  ||    |  ||||       || |  ||     |   |||| | |  || |      
ACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCAAAGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATTTATGCTGATACGgtgtgtt--tctcttattttaacaccaaattcatagctaaaacatttgtaacattaagtgacaacatatgt-----agtacaataattaaacag------

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA08G17010.2 (Glycine max), 5'ss of exon 9
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgacctgcagcgtctgttctaaacctaactgaggagaatacagacgattagaatcagacttgagtcaacaacctcaatcagtggacgggtttaa-------
||  |||| ||| ||||||| ||  || | || || | |||||| |||||||||||||| ||||| || ||||| |||||||| || |||||||| ||  |||  |    | | |      ||||     ||    |   | ||  |  ||  ||     | | |  |||||  ||        ||  |  |||         
ACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTCATCTATGCTGATACGgtgtgtttcctattaccttaaaagttaaattc--cttgctaatttccaatctcttgtaa-----cattaagcaacatacttggctgaggggtgattttcttcagcac

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA15G42140.2 (Glycine max), 5'ss of exon 8
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttg-----acctgcagcgtctgttctaaacctaactgaggagaatacagacgatta-gaatcagacttgagtcaacaacctcaatcagtggacgggtttaa
||  |||| ||| ||||||| ||  || | || || | |||||| |||||||||||||||||||| || ||||| ||||| || || |||||||| ||  |||      || |  |  ||    |      |||| |    |        |  |||| | |  | ||||      |||  || | | | |  |   |     
ACAAGTGCATCTTTGAAATTCACAGTATTAAACCCAATGGGCCGAATTTGGACAATGGTTGCTGGGGGAGGTGCTAGTGTTATCTATGCTGATACGgtgtgtttctattactttaaaagttaaattccttgctaatttccaatctcttgtaacattaagcaatacactt---cttacatactaatttattaaaacag-----

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA19G41390.1 (Glycine max), 5'ss of exon 4
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgacctgcagcgtc----tgttctaaacctaactgag--gagaatacag--acgattagaatcagacttgagtcaacaacctcaatcagtggacgggtttaa--------------------------
||  |||| ||  ||||||| ||  || |||| || || || ||||| ||| ||||||| || ||||||||||  ||||| ||||| ||||||||||||||||  | ||    ||     | ||  |   ||  || |   | ||||| ||   | ||   || ||||  | | |    |   |   |           |||                            
ACAAGTGCATCATTGAAATTTACTGTATTGAACCCAAAAGGACGCATCTGGGCAATGGTAGCAGGAGGTGGTGTGAGTGTAATTTATGCTGATACTgtaagtttccatgttttgttgatatatttcagttcttgctaaaatgtgaataaaggggccatctcaaacagagattattgggaagttttcttttagaagttcttttggtgagttaatatacctatgtttactag

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA02G04120.2 (Glycine max), 5'ss of exon 9
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgacctgcagcgtctgttctaaacctaactgaggagaatacagacgattagaatcagacttgagtca-acaacctcaatcagtggacgggtttaa
||  |||| ||  | ||||| ||  |  |||| || |||||||| |||||||||||||| ||||| || ||||| ||||| || || |||||||| ||  |||   ||      |     | |||   |       |  ||    |  ||||       ||||  ||   ||||  | ||  |   |          
ACAAGTGCATCCTTAAAATTCACAGTGTTGAACCCTAAGGGCCGAATTTGGACAATGGTAGCTGGGGGAGGTGCTAGTGTTATCTATGCTGATACGgtgtgtt--tctcttattttaacaccaaattcatagctaaaacatttgtaacattaagtgacaacttatgtagtacaatattaa--aacag----------

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: AT1G09430.1 (Arabidopsis thaliana), 5'ss of exon 8
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttg----------acctgcagcgt----ctgttctaaacctaactgaggagaatacagacgattagaatcagacttgagtcaacaacctcaatcagtggacgggtttaa----------------------------------------------------------------------------------------
||  |||||||| |||| || ||  |  ||||||| || |||||||||||||| ||||| |||||||||||||| || ||||| || |||||||| || |||||          || |   || |     | |||       ||   |    |||| |||  || ||| |  || ||   | || || ||||     |   |   |  ||                                                                                        
ACAAGTGCTTCTTTGAAGTTCACTGTTTTGAATCCTAAAGGCCGCATTTGGACGATGGTAGCTGGAGGTGGTGCTAGCGTCATATATGCTGATACAgtgagttgcaacccctgaacttaaggcatgctaattttcatggttgaatcaactcaaatatagattat-agattatgatttt--taaaaaatctcatatccttaccatttcaaaagactggaaaaaaaattccttcaaatgatgactccaaagaatttctcacattaatttgtttttgttgtccttatctgcttttgttaag

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: Vv14s0060g00550.t01 (Vitis vinifera), 5'ss of exon 8
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgacctgca-gcgtctgttctaaacctaactgaggagaat---acagacgattagaatcagacttgagtcaacaacctcaatcag----tggacgggtttaa---------------------------------------------
||  |||| ||| |||| || ||  |  |||| || || || ||||| ||||| ||||| |||||||||||||| ||||| || || || ||||||||||||  |||| ||    ||   || |  | | | |||     ||   |     | ||  ||   ||      || |||       |  |    |||| || ||| |                                             
ACAAGTGCATCTTTGAAGTTCACTGTTTTGAACCCCAAAGGACGCATCTGGACTATGGTAGCTGGAGGTGGTGCAAGTGTTATATATGCCGATACTgtaagtgcacctccatatctcacatccacccattattgacatttatttcatccgtggttgaaaaatgaagcatttctacatttattgttggaacttggaaggattttacctgtttaatactaaaccttgatgattttgtttccatttaaccag

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: EFJ27687 (Selaginella moellendorffii), 5'ss of exon 8
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgacctgcagcgtctgttctaaacctaactgaggagaatacagacgattagaatcagacttgagtcaacaacctcaatcagtggacgggtttaa
|| ||||| ||| | ||  |||| ||||| |||||||| || ||||||||||||||||| ||||| ||||| || ||||| || || || || || ||||  |  ||| |    |   || |     |  || | |  | |   |   ||   |                                          
ACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGGACAATGGTCGCTGGCGGTGGCGCGAGTGTGATCTATGCCGACACAgtaatgtttccttcttttttcctttt---tttgtctaaagctattgtcgttaatcgaag-----------------------------------------

upper sequence: PP1S63_54V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: EFJ37257 (Selaginella moellendorffii), 5'ss of exon 8
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgacctgcagcgtctgttctaaacctaactgaggagaatacagacgattagaatcagacttgagtcaacaacctcaatcagtggacgggtttaa
|| ||||| ||| | ||  |||| ||||| |||||||| || ||||||||||||||||| ||||| ||||| || ||||| || || || || || |||| ||  ||| |    |   || |     |  || | |  | |   |   ||   |                                          
ACTGGTGCGTCTTTAAAGCTGACAATACTAAATCCGAAAGGTCGCATTTGGACAATGGTCGCTGGCGGTGGCGCGAGTGTGATCTATGCCGACACAgtaatttttccttcttttttcctttt---tttgtctaaagctattgtcgttaatcgaag-----------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208365149|gb|DC946778.1|DC946778
EST:     TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACT                         GTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
genomic: TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgac ... gaatttgtagGTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
EST: gi|162235867|gb|FC412418.1|FC412418
EST:     TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACT                         GTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
genomic: TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgac ... gaatttgtagGTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
EST: gi|18336575|gb|BJ168597.1|BJ168597
EST:     TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACT                         GTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
genomic: TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgac ... gaatttgtagGTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
EST: gi|208364467|gb|DC958036.1|DC958036
EST:     TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACT                         GTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
genomic: TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgac ... gaatttgtagGTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
EST: gi|37846736|gb|BJ604744.1|BJ604744
EST:     TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACT                         GTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
genomic: TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgac ... gaatttgtagGTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
EST: gi|22492495|gb|BU052418.1|BU052418
EST:     TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACT                         GTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
genomic: TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgac ... gaatttgtagGTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
EST: gi|37849163|gb|BJ607171.1|BJ607171
EST:     GGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACT                         GTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
genomic: GGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgac ... gaatttgtagGTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
EST: gi|37841322|gb|BJ599330.1|BJ599330
EST:     TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACT                         GTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
genomic: TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgac ... gaatttgtagGTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
EST: gi|67697641|gb|BJ957874.1|BJ957874
EST:     TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACT                         GTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
genomic: TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgac ... gaatttgtagGTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
EST: gi|208385420|gb|DC956632.1|DC956632
EST:     TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACT                         GTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
genomic: TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgac ... gaatttgtagGTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
EST: gi|37845681|gb|BJ603689.1|BJ603689
EST:     TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACT                         GTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
genomic: TTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgac ... gaatttgtagGTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
EST: gi|162162206|gb|FC337988.1|FC337988
EST:     CAGTGTCATTTACGCTGATACT                         GTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT
genomic: CAGTGTCATTTACGCTGATACTgtaagttgac ... gaatttgtagGTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 32 (downstream exon)
Score: 21

ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgac ... gaatttgtagGTCGGGGATCTTGGTTATGCACACGAGCTTGGCAATTATGCTGAGTACAGTGGAGCTCCAAATGAAGAAGAGACTTTGCAGTATGCCCGTGCTTTGATTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ACCGGTGCTTCTCTGAAATTGACGATACTGAATCCGAAGGGCCGCATTTGGACAATGGTTGCTGGAGGTGGTGCCAGTGTCATTTACGCTGATACTgtaagttgacctgcagcgtctgttctaaacctaactgaggagaatacagacgattagaatcagacttgagtcaacaacctcaatcagtggacgggtttaa

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCTGAT