1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GCCACTATGTGAAGATGATGACGAAGATGATGTAGATGATGCAGATCGTGGAGATGACGAACCTGATACTAATCATTTAGTCCTTGCCCAGTTTGATAAGgtcagtagtctatcctgttattcgtggctgcctgggtaatttttttgaatcttgggtcattatcggacgtctggtttacgaatgtgaatcagatgattag...
species | Physcomitrella patens |
transcript | PP1S62_239V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAGATGACGAACCTGATACTAATCATTTAGTCCTTGCCCAGTTTGATAAG GTAACTAGGTCAAAGAACAAGTGGAAGTGTACTCTGAAGGATGGTATCATGEST: gi|162272699|gb|FC448325.1|FC448325
genomic: GAGATGACGAACCTGATACTAATCATTTAGTCCTTGCCCAGTTTGATAAGgtcagtagtc ... ttatgagcagGTAACTAGGTCAAAGAACAAGTGGAAGTGTACTCTGAAGGATGGTATCATG
EST: GAGATGACGAACCTGATACTAATCATTTAGTCCTTGCCCAGTTTGATAAG GTAACTAGGTCAAAGAACAAGTGGAAGTGTACTCTGAAGGATGGTATCATGEST: gi|162211734|gb|FC387398.1|FC387398
genomic: GAGATGACGAACCTGATACTAATCATTTAGTCCTTGCCCAGTTTGATAAGgtcagtagtc ... ttatgagcagGTAACTAGGTCAAAGAACAAGTGGAAGTGTACTCTGAAGGATGGTATCATG
EST: GAGATGACGAACCTGATACTAATCATTTAGTCCTTGCCCAGTTTGATAAG GTAACTAGGTCAAAGAACAAGTGGAAGTGTACTCTGAAGGATGGTATCATG
genomic: GAGATGACGAACCTGATACTAATCATTTAGTCCTTGCCCAGTTTGATAAGgtcagtagtc ... ttatgagcagGTAACTAGGTCAAAGAACAAGTGGAAGTGTACTCTGAAGGATGGTATCATG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCCACTATGTGAAGATGATGACGAAGATGATGTAGATGATGCAGATCGTGGAGATGACGAACCTGATACTAATCATTTAGTCCTTGCCCAGTTTGATAAGgtcagtagtctatcctgttattcgtggctgcctgggtaatttttttgaatcttgggtcattatcggacgtctggtttacgaatgtgaatcagatgattag
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