1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCTTCTTCCTTGTGTGCCTGCAGGAGTTTGCTGAATTTGCAAACGCCAGGGACCGGGCAGCCAATATCCCCCCTGAAAAATGTTTCAAGCTTCCATACAAgttcgtaaactgagagcccctcccatttctccatttaattttaaatttaattaattaattttccacttgccaattattgactaaaagtgactgattataattgtgatcattcatcag
species | Physcomitrella patens |
transcript | PP1S51_193V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GACCGGGCAGCCAATATCCCCCCTGAAAAATGTTTCAAGCTTCCATACAA GATCGAGAATGACAAAGTTGAGGGGTTTACTATTACTCAAAGCTTTAATAGEST: gi|37825149|gb|BJ583215.1|BJ583215
genomic: GACCGGGCAGCCAATATCCCCCCTGAAAAATGTTTCAAGCTTCCATACAAgttcgtaaac ... cattcatcagGATCGAGAATGACAAAGTTGAGGGGTTTACTATTACTCAAAGCTTTAATAG
EST: CCTGAAAAATGTTTCAAGCTTCCATACAA GATCGAGAATGACAAAGTTGAGGGGTTTACTATTACTCAAAGCTTTAATAGEST: gi|37837979|gb|BJ595987.1|BJ595987
genomic: CCTGAAAAATGTTTCAAGCTTCCATACAAgttcgtaaac ... cattcatcagGATCGAGAATGACAAAGTTGAGGGGTTTACTATTACTCAAAGCTTTAATAG
EST: TGAAAAATGTTTCAAGCTTCCATACAA GATCGAGAATGACAAAGTTGAGGGGTTTACTATTACTCAAAGCTTTAATAG
genomic: TGAAAAATGTTTCAAGCTTCCATACAAgttcgtaaac ... cattcatcagGATCGAGAATGACAAAGTTGAGGGGTTTACTATTACTCAAAGCTTTAATAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTCTTCCTTGTGTGCCTGCAGGAGTTTGCTGAATTTGCAAACGCCAGGGACCGGGCAGCCAATATCCCCCCTGAAAAATGTTTCAAGCTTCCATACAAgttcgtaaactgagagcccctcccatttctccatttaattttaaatttaattaattaattttccacttgccaattattgactaaaagtgactgattataattgtgatcattcatcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT