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TTATGATGCACTGCATGGCGTTGCTGGTGTGTATGCTAAGAAGATTTTCTTGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAGgtaagttcataagatccaaattcatgtagaggctgcccaatgccacctggatatgttgccttgtagattaatgcaatgtcgatatttcaaaagaatctgt...
species | Physcomitrella patens |
transcript | PP1S4_12V6.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAG GAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAAEST: gi|162159187|gb|FC334358.1|FC334358
genomic: TGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAGgtaagttcat ... ttatatgcagGAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAA
EST: TGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAG GAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAAEST: gi|162175775|gb|FC352077.1|FC352077
genomic: TGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAGgtaagttcat ... ttatatgcagGAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAA
EST: TGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAG GAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAAEST: gi|162198744|gb|FC374227.1|FC374227
genomic: TGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAGgtaagttcat ... ttatatgcagGAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAA
EST: TGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAG GAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAAEST: gi|100406742|gb|BY955714.1|BY955714
genomic: TGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAGgtaagttcat ... ttatatgcagGAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAA
EST: AGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAG GAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAAEST: gi|162185024|gb|FC362470.1|FC362470
genomic: AGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAGgtaagttcat ... ttatatgcagGAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAA
EST: TGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAG GAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAAEST: gi|162187301|gb|FC363459.1|FC363459
genomic: TGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAGgtaagttcat ... ttatatgcagGAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAA
EST: GGAAAGCTCACTGTTGAATTGCGAACCCAAG GAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAAEST: gi|162276463|gb|FC452466.1|FC452466
genomic: GGAAAGCTCACTGTTGAATTGCGAACCCAAGgtaagttcat ... ttatatgcagGAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAA
EST: TGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAG GAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAA
genomic: TGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAGgtaagttcat ... ttatatgcagGAAGACTTCGGTGGAGGTCACCCTGATCCCAATTTGACCTACGCTAAGGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTATGATGCACTGCATGGCGTTGCTGGTGTGTATGCTAAGAAGATTTTCTTGGAGGAATTGGGAGCGAAGGAAAGCTCACTGTTGAATTGCGAACCCAAGgtaagttcataagatccaaattcatgtagaggctgcccaatgccacctggatatgttgccttgtagattaatgcaatgtcgatatttcaaaagaatctgt
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaaagaa