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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTGCACTTCTTTACATCGTACCGGGAGTGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtaccatgcactttctgtttttcttttgtaaaaagttttatggctgatttgcgatcaggatcgtgcagataatcgatgtattttaatattatattttgcgttccgtgtag

Basic information

species Physcomitrella patens
transcript PP1S47_5V6.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37836833|gb|BJ594841.1|BJ594841
EST:     TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT                         CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: gi|208363383|gb|DC946981.1|DC946981
EST:     TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT                         CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: gi|208385887|gb|DC956725.1|DC956725
EST:     TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT                         CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: gi|208353491|gb|DC922503.1|DC922503
EST:     TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT                         CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: gi|208364937|gb|DC947079.1|DC947079
EST:     TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT                         CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: gi|15261574|gb|BI436884.1|BI436884
EST:     TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT                         CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: gi|67696009|gb|BJ956242.1|BJ956242
EST:     TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT                         CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: gi|37836672|gb|BJ594680.1|BJ594680
EST:     TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT                         CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: gi|37849189|gb|BJ607197.1|BJ607197
EST:     TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT                         CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: gi|37826376|gb|BJ584388.1|BJ584388
EST:     TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT                         CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: gi|162211219|gb|FC386931.1|FC386931
EST:     TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT                         CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
EST: gi|208358589|gb|DC946550.1|DC946550
EST:     TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCT                         CTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC
genomic: TGATCGGGTTTTTGGGCGTCCATTGTGCTATGAGGGGCGAAATCAAGCCTgtgagtacca ... ttccgtgtagCTTCTGGAGTTCGATGAGTCTGCTGCAGCCCGAGACAGTACTGACGAAGCC