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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCATACCTCCCACTGTCCCAGAGGACCTAAATGCAGCCATCAAGAGTGGAAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgagagcccgctttcttcgcatatggtggtctatgaattgctggattttgtagttccctattctcgataataacctaagtgaaagttacttaaca...

Basic information

species Physcomitrella patens
transcript PP1S46_63V6.4
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S46_63V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: EFJ33298 (Selaginella moellendorffii), 5'ss of exon 10
TTCATACCTCCCACTGTCCCAGAGGACCTAAATGCAGCCATCAAGAGTGGAAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgagagcccgctttcttcgcatatggtggtctatgaattgctggattttgtagttccctattctcgataataacctaagtgaaagttacttaaca
 | |  ||||||| ||| || || ||||| ||    ||  | ||||  || ||||| || || || || |||||||| ||||| ||||||||||||||||||  |  ||       || |    ||||||| |||   |   ||      |  || ||                                          
GTTACTCCTCCCATTGTTCCCGAAGACCTTAACATTGCTGTGAAGAACGGCAAAGTTCGTGCTCCCACTCACATTGTTTCTACCATTTGTGATGATAGAGgtttcaaagctatactttccaaaccatatggcggtaattctgtttacttttgctgcag------------------------------------------

upper sequence: PP1S46_63V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: EFJ15935 (Selaginella moellendorffii), 5'ss of exon 10
TTCATACCTCCCACTGTCCCAGAGGACCTAAATGCAGCCATCAAGAGTGGAAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgagagcccgctttcttcgcatatggtggtctatgaattgctggattttgtagttccctattctcgataataacctaagtgaaagttacttaaca
 | |  ||||||| ||| || || ||||| ||    ||  | ||||  || ||||| || || || || |||||||| ||||| ||||||||||||||||||  |  ||        | |    ||||||| |||   |   ||      |  || ||                                          
GTTACTCCTCCCATTGTTCCCGAAGACCTTAACATTGCTGTGAAGAACGGCAAAGTTCGTGCTCCCACTCACATTGTTTCTACCATTTGTGATGATAGAGgtttcaaagctatactctccaaaccatatggcggtaattctgtttacttttgctgcag------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67574889|gb|BJ947713.1|BJ947713
EST:     AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAG                         GTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
genomic: AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgaga ... ccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
EST: gi|208366526|gb|DC955602.1|DC955602
EST:     AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAG                         GTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
genomic: AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgaga ... ccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
EST: gi|162197631|gb|FC374465.1|FC374465
EST:     AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAG                         GTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAG
genomic: AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgaga ... ccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAG
EST: gi|162150458|gb|FC326106.1|FC326106
EST:     AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAG                         GTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
genomic: AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgaga ... ccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
EST: gi|162196012|gb|FC372183.1|FC372183
EST:     AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAG                         GTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
genomic: AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgaga ... ccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
EST: gi|100385297|gb|BY950889.1|BY950889
EST:     AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAG                         GTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG
genomic: AAAAGTGCGGGCACCTACACACATTGTGTCTACTATTTGTGATGATAGAGgtacctgaga ... ccttctgtagGTGAAGAGCCAACATATGCCGGCGTGGCAATGTCCACGATTATTGAGAAGG