Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatttttcctcatcacgttaagttggcctttcgaaagcatcttgtgtaagggttttcatagcttatggttgtgcagaaggcttgcaggacatac...

Basic information

species Physcomitrella patens
transcript PP1S450_21V6.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208357191|gb|DC926538.1|DC926538
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|7583276|gb|AW699440.1|AW699440
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162218487|gb|FC395064.1|FC395064
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208353431|gb|DC918487.1|DC918487
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162234869|gb|FC410642.1|FC410642
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37828958|gb|BJ586970.1|BJ586970
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162185929|gb|FC361029.1|FC361029
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37852710|gb|BJ610718.1|BJ610718
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162268622|gb|FC443676.1|FC443676
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162232564|gb|FC408400.1|FC408400
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162184165|gb|FC359639.1|FC359639
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162176322|gb|FC353507.1|FC353507
EST:     CTTTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208397366|gb|DC916320.1|DC916320
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37827165|gb|BJ585177.1|BJ585177
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37822149|gb|BJ580215.1|BJ580215
EST:     CTCTGATCGAGACAGGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208380828|gb|DC923310.1|DC923310
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|67727441|gb|BJ977700.1|BJ977700
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162265940|gb|FC442943.1|FC442943
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|208388243|gb|DC945575.1|DC945575
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162232563|gb|FC408399.1|FC408399
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|37821562|gb|BJ579628.1|BJ579628
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
EST: gi|162227004|gb|FC403361.1|FC403361
EST:     CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTTTCATG                         GTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC
genomic: CTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatt ... ttgttcacagGTTAAGCCTGCCATGCCCTACCTGGACGTCATCAGGCTTTTGCGCGACAAC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATCAAATGAACCCCGCAAATTACCGCGAGGCTCTGATCGAGACAAGGTTGGACGAAGCTGAAGGTGCTGACATTCTCATGgtacgatatttttcctcatcacgttaagttggcctttcgaaagcatcttgtgtaagggttttcatagcttatggttgtgcagaaggcttgcaggacatac

- - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG