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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTGTGGGATGTGAACATGGAATCTGCTCCTGTGGCTACATTTAAAGTTCACGAGCATTTGCGACCAAAGgtgaaccttgtcatttctcttgtataaccttgttctgatttgtcagtatgtccttttctctgtgattaactgaattaaggtggacttgttattgaaaatc...

Basic information

species Physcomitrella patens
transcript PP1S425_2V6.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162255329|gb|FC432055.1|FC432055
EST:     AATCTGCTCCTGTGGCTACATTTAAAGTTCACGAGCATTTGCGACCAAAG                         CTCTGTGATCTTTATGAGAACGATTCAATCTTCGATAAGTTTGAGTGTTGT
genomic: AATCTGCTCCTGTGGCTACATTTAAAGTTCACGAGCATTTGCGACCAAAGgtgaaccttg ... ttttttgcagCTCTGTGATCTTTATGAGAACGATTCAATCTTCGATAAGTTTGAGTGTTGT
EST: gi|162150294|gb|FC326379.1|FC326379
EST:     AATCTGCTCCTGTGGCTACATTTAAAGTTCACGAGCATTTGCGACCAAAG                         CTCTGTGATCTTTATGAGAACGATTCAATCTTCGATAAGTTTGAGTGTTGT
genomic: AATCTGCTCCTGTGGCTACATTTAAAGTTCACGAGCATTTGCGACCAAAGgtgaaccttg ... ttttttgcagCTCTGTGATCTTTATGAGAACGATTCAATCTTCGATAAGTTTGAGTGTTGT
EST: gi|162258030|gb|FC434124.1|FC434124
EST:     AATCTGCTCCTGTGGCTACATTTAAAGTTCACGAGCATTTGCGACCAAAG                         CTCTGTGATCTTTATGAGAACGATTCAATCTTCGATAAGTTTGAGTGTTGT
genomic: AATCTGCTCCTGTGGCTACATTTAAAGTTCACGAGCATTTGCGACCAAAGgtgaaccttg ... ttttttgcagCTCTGTGATCTTTATGAGAACGATTCAATCTTCGATAAGTTTGAGTGTTGT