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GTACTGGGAACCAGTTTATGAGGACTCTATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctacattcagttgctgtctcttggtcatgcttggaattttactcagcatctgccatgaagtactagtccttcaattgataaatgcacaaactacaaatgcttgttgtttttgaaactatgtggtaagctctatctttatgcatcgttggggctgttttctgtag
species | Physcomitrella patens |
transcript | PP1S37_33V6.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGAATCTGATTGCCCCGCT-GCCAGAGTTAGCTGCGTACATATATCGGAG GGTGTATAAAGGTGGAGATGTGATTGCAGCEST: gi|162165709|gb|FC340890.1|FC340890
genomic: TGAATCTGATTGCCC-GCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctaca ... ttttctgtagGGTGTATAAAGGTGGAGATGTGATTGCAGC
EST: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAG GGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGCEST: gi|208386538|gb|DC952747.1|DC952747
genomic: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctaca ... ttttctgtagGGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGC
EST: TGCGTACATATATCNGA- GGTGTATAAAGGT-GAGATGTGA-TGCAGCAGA-TCAAGTTTGGATTACGCEST: gi|208373915|gb|DC940426.1|DC940426
genomic: TGCGTACATATATCGGAGgtaagctaca ... ttttctgtagGGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGC
EST: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAN GGTGTATAA-GGTGGAGATGTGATTGCAGCANATNCANGTTTGGATTACGCEST: gi|208363044|gb|DC957985.1|DC957985
genomic: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctaca ... ttttctgtagGGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGC
EST: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAG GGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGCEST: gi|162176173|gb|FC351915.1|FC351915
genomic: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctaca ... ttttctgtagGGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGC
EST: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAG GGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGGAT-ACGEST: gi|162233299|gb|FC409849.1|FC409849
genomic: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctaca ... ttttctgtagGGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGG-ATTACG
EST: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAG GGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGCEST: gi|100352729|gb|BY945419.1|BY945419
genomic: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctaca ... ttttctgtagGGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGC
EST: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAG GGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGCEST: gi|19783472|gb|BQ040017.1|BQ040017
genomic: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctaca ... ttttctgtagGGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTACGC
EST: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAG GGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCCAGTTTGGATTACEST: gi|162258522|gb|FC434737.1|FC434737
genomic: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctaca ... ttttctgtagGGTGTATAAAGGTGGAGATGTGATTGCAGCAGATTCAAGTTTGGATTAC
EST: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAG GGTGTATAAAGGTGGAGATGTGATTGCAGC
genomic: ATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctaca ... ttttctgtagGGTGTATAAAGGTGGAGATGTGATTGCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACTGGGAACCAGTTTATGAGGACTCTATGAATCTGATTGCCCGCTTGCCAGAGTTAGCTGCGTACATATATCGGAGgtaagctacattcagttgctgtctcttggtcatgcttggaattttactcagcatctgccatgaagtactagtccttcaattgataaatgcacaaactacaaatgcttgttgtttttgaaactatgtggtaagctctatctttatgcatcgttggggctgttttctgtag
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