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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGGTTTGGGCATGCTGTGCTGAGGAAAACTGACCCCCGATATATATGTCAGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttctatctacagtctatttttgaaatggtaagaacgaccatgtaaaatgtagacaactttctgtatcataaattgtaagtgaatgtcccatca...

Basic information

species Physcomitrella patens
transcript PP1S37_33V6.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162176172|gb|FC351914.1|FC351914
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|162165708|gb|FC340889.1|FC340889
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|208386538|gb|DC952747.1|DC952747
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|67697462|gb|BJ957695.1|BJ957695
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|37823157|gb|BJ581223.1|BJ581223
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|208388659|gb|DC953435.1|DC953435
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|208363044|gb|DC957985.1|DC957985
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATNGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|37847922|gb|BJ605930.1|BJ605930
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|37835509|gb|BJ593521.1|BJ593521
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|162152561|gb|FC328839.1|FC328839
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|67724660|gb|BJ974919.1|BJ974919
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|162194037|gb|FC370212.1|FC370212
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|208356950|gb|DC922286.1|DC922286
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|162234310|gb|FC409848.1|FC409848
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|37825198|gb|BJ583264.1|BJ583264
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
EST: gi|162202112|gb|FC378033.1|FC378033
EST:     AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATG                         GTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG
genomic: AGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttc ... tgctttgcagGTATCGAAATTGTTTGAGGTGGTTCCTCCTATTCTTTTGGCAGGCGGAAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGGGTTTGGGCATGCTGTGCTGAGGAAAACTGACCCCCGATATATATGTCAGCGTGAATTTGCACTTAAACATCTTCCCGAAGATCCCATGTTCAAGATGgtatgatttctatctacagtctatttttgaaatggtaagaacgaccatgtaaaatgtagacaactttctgtatcataaattgtaagtgaatgtcccatca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG