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ACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCGCAAGTTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCGgtacgattcttttcgttctttgcattacgttaaaaagaggctatatgggcagtcaaatatggtggaagtctcagggaggttgatatggatcgttgataag...
species | Physcomitrella patens |
transcript | PP1S37_122V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCG AGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATCEST: gi|37830933|gb|BJ588945.1|BJ588945
genomic: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCGgtacgattct ... tctttcccagAGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATC
EST: TGTATCAAAGGGAGTTTCCATGGCTGCNGCCAGTCATTTCG AGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATCEST: gi|162172093|gb|FC347969.1|FC347969
genomic: TGTATCAAAGGGAGTTTCCATGGCTGATG-CAGTCATTTCGgtacgattct ... tctttcccagAGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAAT-
EST: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCG AGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATCEST: gi|162248390|gb|FC422566.1|FC422566
genomic: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCGgtacgattct ... tctttcccagAGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATC
EST: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCG AGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATCEST: gi|37828610|gb|BJ586622.1|BJ586622
genomic: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCGgtacgattct ... tctttcccagAGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATC
EST: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCG AGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATCEST: gi|162172079|gb|FC347968.1|FC347968
genomic: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCGgtacgattct ... tctttcccagAGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATC
EST: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCG AGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATCEST: gi|162235377|gb|FC412344.1|FC412344
genomic: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCGgtacgattct ... tctttcccagAGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATC
EST: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCG AGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATCEST: gi|37822289|gb|BJ580355.1|BJ580355
genomic: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCGgtacgattct ... tctttcccagAGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATC
EST: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCG AGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATCEST: gi|162266004|gb|FC442689.1|FC442689
genomic: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCGgtacgattct ... tctttcccagAGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATC
EST: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCG AGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATCEST: gi|37839391|gb|BJ597399.1|BJ597399
genomic: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCGgtacgattct ... tctttcccagAGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATC
EST: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCG AGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATCEST: gi|37837549|gb|BJ595557.1|BJ595557
genomic: TTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCGgtacgattct ... tctttcccagAGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATC
EST: TATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCG AGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATC
genomic: TATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCGgtacgattct ... tctttcccagAGTTATCAATTAGCTGAGGATTTGGGCCAAGCATTCTCGGAACGCTCAATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACTTTTCCAGCTGAGGGAGCGGGGATTGTTAGAGCTTCTATCCTCGCAAGTTTCATCTCTTGTATCAAAGGGAGTTTCCATGGCTGATGCAGTCATTTCGgtacgattcttttcgttctttgcattacgttaaaaagaggctatatgggcagtcaaatatggtggaagtctcagggaggttgatatggatcgttgataag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaagag