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GTACCACACTTGTATTGCATCGGCGATGCAAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGGgtgggtcatacgaccctgttcctcgggattgaagcgctaacattggattcataacattatattcatatttattttattgattatgggcaatctcactcgtcccagtttctcacataaaatcgatatgcgttggttttttatgaacag
species | Physcomitrella patens |
transcript | PP1S35_94V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGG TAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGCEST: gi|19786466|gb|BQ040483.1|BQ040483
genomic: AAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGGgtgggtcata ... ttatgaacagTAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGC
EST: AAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGG TAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGCEST: gi|67692532|gb|BJ952765.1|BJ952765
genomic: AAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGGgtgggtcata ... ttatgaacagTAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGC
EST: AAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGG TAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGCEST: gi|162195483|gb|FC370900.1|FC370900
genomic: AAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGGgtgggtcata ... ttatgaacagTAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGC
EST: AAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGG TAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGCEST: gi|162195482|gb|FC370899.1|FC370899
genomic: AAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGGgtgggtcata ... ttatgaacagTAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGC
EST: AATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAA-GCATTTCGGG TAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGEST: gi|162185503|gb|FC362572.1|FC362572
genomic: AATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTC-GGgtgggtcata ... ttatgaacagTAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTG
EST: AAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGG TAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGCEST: gi|162185502|gb|FC362571.1|FC362571
genomic: AAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGGgtgggtcata ... ttatgaacagTAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGC
EST: AAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGG TAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGCEST: gi|162170368|gb|FC346773.1|FC346773
genomic: AAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGGgtgggtcata ... ttatgaacagTAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGC
EST: TGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGG TAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGCEST: gi|208380575|gb|DC919361.1|DC919361
genomic: TGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGGgtgggtcata ... ttatgaacagTAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGC
EST: NAATGGCAAGATGATGCTTGCTCATGCAGCCAGCGCTCAAGGCATTTCGG TAATTGAGCAGA-TGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGCEST: gi|162166908|gb|FC343293.1|FC343293
genomic: AAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGGgtgggtcata ... ttatgaacagTAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCATAATAGCGTGC
EST: TGCAGCAAGCGCTCAAGGCATTTCGG TAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAACCCATAATAGCGTG
genomic: TGCAGCAAGCGCTCAAGGCATTTCGGgtgggtcata ... ttatgaacagTAATTGAGCAGATTGCTGGCCGAGATAACATTTTGAA-CCATAATAGCGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTACCACACTTGTATTGCATCGGCGATGCAAATGGCAAGATGATGCTTGCTCATGCAGCAAGCGCTCAAGGCATTTCGGgtgggtcatacgaccctgttcctcgggattgaagcgctaacattggattcataacattatattcatatttattttattgattatgggcaatctcactcgtcccagtttctcacataaaatcgatatgcgttggttttttatgaacag
- - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG