1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGATAATGCGGGATTGGATAGTGCAGATTTAGTCTCTCAATTACGTGCGGCTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAGgtacatgacaagaatttactgcatacttttgttgatatcttccgttgaaagtgttcaaagtactgctgcgctcgaccattaaagtaatattaaagggttctcgtatcttctctgtag
species | Physcomitrella patens |
transcript | PP1S307_63V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAG GTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAGEST: gi|162252864|gb|FC429237.1|FC429237
genomic: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAGgtacatgaca ... ttctctgtagGTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAG
EST: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAG GTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAGEST: gi|37841254|gb|BJ599262.1|BJ599262
genomic: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAGgtacatgaca ... ttctctgtagGTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAG
EST: TCATTCAGAGGATGGTTGCAGATCCGGGCATTGATGTCATTTCTGGAGAG GTGGGAGACATGGAGAAGCTTGGCATTTACGAGGCAGTTAAGGTGAAGCAGEST: gi|162221930|gb|FC398198.1|FC398198
genomic: TCATTCAGAGGATGGTTGCAGATCC-GGCATTGATGTCATTTCTGGAGAGgtacatgaca ... ttctctgtagGTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAG
EST: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAG GTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAGEST: gi|162185508|gb|FC361232.1|FC361232
genomic: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAGgtacatgaca ... ttctctgtagGTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAG
EST: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAG GTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAGEST: gi|208349634|gb|DC922024.1|DC922024
genomic: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAGgtacatgaca ... ttctctgtagGTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAG
EST: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAG GTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAGEST: gi|162259604|gb|FC435531.1|FC435531
genomic: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAGgtacatgaca ... ttctctgtagGTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAG
EST: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAG GTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAGEST: gi|162165576|gb|FC341415.1|FC341415
genomic: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAGgtacatgaca ... ttctctgtagGTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAG
EST: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAG GTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAGEST: gi|162185562|gb|FC362001.1|FC362001
genomic: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAGgtacatgaca ... ttctctgtagGTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAG
EST: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAG GTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAGEST: gi|67693932|gb|BJ954165.1|BJ954165
genomic: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAGgtacatgaca ... ttctctgtagGTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAG
EST: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAG GTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAG
genomic: CTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAGgtacatgaca ... ttctctgtagGTTGGAGACATGGAGAAGCTTGGCATTTACGAGGCATTTAAGGTGAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATAATGCGGGATTGGATAGTGCAGATTTAGTCTCTCAATTACGTGCGGCTCATTCAGAGGATGGTTGCAGATCCGGCATTGATGTCATTTCTGGAGAGgtacatgacaagaatttactgcatacttttgttgatatcttccgttgaaagtgttcaaagtactgctgcgctcgaccattaaagtaatattaaagggttctcgtatcttctctgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA