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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAACCCCTTCTACGCTGGATTTGGGAATCGTGATACTGATGAAATTAGTTATCTCAAAGTTGGTATCCCTAAAGGCAAAATATTCATTATTAATCCCAAGgtaattattttgccatatgtagtatttgaatctaggtggcttatgctttaagtagattatatagaagatgagtcgaatgtgtatccttgatctgttttgt...

Basic information

species Physcomitrella patens
transcript PP1S2_272V6.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S2_272V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: LOC_Os11g40080.1 (Oryza sativa), 5'ss of exon 8
TAACCCCTTCTACGCTGGATTTGGGAATCGTGATACTGATGAAATTAGTTATCTCAAAGTTGGTATCCCTAAAGGCAAAATATTCATTATTAATCCCAAGgta----attattttgccatatg--tagtatttgaatctaggtggcttatgctttaagtagattatatagaagatgagtcgaatgtgtatccttgatctgttttgt--------------------------
 || || ||||| ||||||||||| ||| | ||||| |||||  ||||||| ||||| ||||| || ||||  |||||||| || ||||| ||||||||||||    || | || | || |||     |   |  ||| |      ||   || |  | | | |      | |   || | | ||   ||  | ||  ||   | |                          
AAATCCATTCTATGCTGGATTTGGAAATAGAGATACAGATGAGCTTAGTTACCTCAAGGTTGGGATTCCTATGGGCAAAATTTTTATTATAAATCCCAAGgtaacagatcacttagacagatggtcccttcctacatccaacaaagtttctctatctgcataattggatcaggcccagcc-agtgaacatattggagatggcatttagaaaatgtgtgtaaattttgtgcag

upper sequence: PP1S2_272V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA17G36130.1 (Glycine max), 5'ss of exon 10
TAACCCCTTCTACGCTGGATTTGGGAATCGTGATACTGATGAAATTAGTTATCTCAAAGTTGGTATCCCTAAAGGCAAAATATTCATTATTAATCCCAAGgtaattattttgccatatgtagtatttgaatctaggtggcttatgctttaagtagattatatagaagatg-agtcgaatgtgtatccttgatctgttttgt
 || || ||||| ||||| ||||| ||| | ||||| |||||| | ||||| || || ||||| ||||| ||||| ||||||||||| |||||||||| ||||  ||||  |   | || |  |  | |||       |    ||  ||   || | | |  | ||  |  | ||  || | |    ||   || ||  | 
GAATCCGTTCTATGCTGGTTTTGGAAATAGGGATACCGATGAAGTCAGTTACCTTAAGGTTGGAATCCCAAAAGGAAAAATATTCATCATTAATCCCAGGgtatgtatta-gtattttgaaacaaataaatgataaaagtacctgaattgtttatagtttgcaaaacttctattctcatttctgagttttcacttttcag-

upper sequence: PP1S2_272V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA06G04230.1 (Glycine max), 5'ss of exon 15
TAACCCCTTCTACGCTGGATTTGGGAATCGTGATACTGATGAAATTAGTTATCTCAAAGTTGGTATCCCTAAAGGCAAAATATTCATTATTAATCCCAAGgtaattattttgccatatgtagtatttgaatctaggtggcttatgctttaagtagatta--tatagaagatgagtcgaatgtgtatccttgatctgttttgt--
 |  || ||||| ||||| ||||| ||| | |||||||||||||| || || || || ||||| || ||   ||| ||||| |||||||||||||||| ||||| ||  |     | |  |  | |  ||  |   |   |  ||||  ||||   | |  | |   |  |  ||| ||  | | |  ||  |    || |   
CAGTCCATTCTATGCTGGTTTTGGTAATAGGGATACTGATGAAATCAGCTACCTTAAGGTTGGAATTCCCCTAGGAAAAATCTTCATTATTAATCCCAGGgtaaataaatcctttttttaaaaagtaaaaatt---tccttggtgctagaagttcctaaaatgtttgaagttcgtcaaacctttcttattttttaagttcgcag

upper sequence: PP1S2_272V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: Vv18s0001g10680.t01 (Vitis vinifera), 5'ss of exon 11
TAACCCCTTCTACGCTGGATTTGGGAATCGTGATACTGATGAAATTAGTTATCTCAAAGTTGGTATCCCTAAAGGCAAAATATTCATTATTAATCCCAAGgtaattattttgccatatgtagtatttgaatctaggtggcttatgctttaagtagattatatagaagatgagtcgaatgtgtatccttgatctgttttgt
 || || ||||| ||||| ||||| || || || ||||||||  |||| || || || ||||| || || ||||||||||||||||| |||||||| |||||||   |   | | | | ||  |  || | |         | |||  |  ||| | | | | ||| |    ||   ||   ||  |   ||||      
CAATCCATTCTATGCTGGTTTTGGAAACCGGGACACTGATGAGTTTAGCTACCTTAAGGTTGGAATTCCAAAAGGCAAAATATTCATCATTAATCCTAAGgtaacc-tgcagacttctata-caggtgtaacagaaaactatgtgcactg-gtataatttgt-gaaaacttctcttctgaccattttgagtctgcag---