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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCACCCCAGTTCAGCTTTTACGATGCTGCTAAGCCAATCTTCACATCGCCTCGGTATCTTCCCCCGACATCAATTGAACAATGCATGgtacccatcctcttccatgtgcatgaatagttggcaatggtacacttggtttacaagtagtttcccgcatcttctaggaatatacgtttaagatcgactt...

Basic information

species Physcomitrella patens
transcript PP1S2_204V6.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162188968|gb|FC364358.1|FC364358
EST:     ACATCAATTGAACAATGCATG                         GTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTA
genomic: ACATCAATTGAACAATGCATGgtacccatcc ... gaaagcgcagGTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTA
EST: gi|162153553|gb|FC330141.1|FC330141
EST:     TCTTCACATCGCCTCGGTATCTTCCCCCGACATCAATTGAACAATGCATG                         GTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTA
genomic: TCTTCACATCGCCTCGGTATCTTCCCCCGACATCAATTGAACAATGCATGgtacccatcc ... gaaagcgcagGTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTA
EST: gi|162173431|gb|FC349810.1|FC349810
EST:     CCCGACATCAATTGAACAATGCATG                         GTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTA
genomic: CCCGACATCAATTGAACAATGCATGgtacccatcc ... gaaagcgcagGTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTA
EST: gi|67693988|gb|BJ954221.1|BJ954221
EST:     CCCCCGACATCAATTGAANCAATGCATG                         GTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGT
genomic: CCCCCGACATCAATTGAA-CAATGCATGgtacccatcc ... gaaagcgcagGTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGT
EST: gi|162153552|gb|FC330140.1|FC330140
EST:     CCCCGACATCAATTGAACAATGCATG                         GTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTA
genomic: CCCCGACATCAATTGAACAATGCATGgtacccatcc ... gaaagcgcagGTTAAGGATTCTATAATATCCCACGGATGCTTCCTCAAGAAATGCAGTGTA