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AGAATTAGGGATCTCTGTAGATGTAGTGGCCACAAGTGAGGTCAGTATATCATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAGgcgagttcgtcataatgctcagttatcatgattttcgtatttaggggaactcactttctactttgtcctggaatcatgagtattcagagaaaatgaatta...
species | Physcomitrella patens |
transcript | PP1S286_35V6.2 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAG GAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTTEST: gi|37822683|gb|BJ580749.1|BJ580749
genomic: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAGgcgagttcgt ... gtaatagcagGAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTT
EST: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCNTAATTGAGCAG GAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTTEST: gi|162278814|gb|FC454657.1|FC454657
genomic: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAGgcgagttcgt ... gtaatagcagGAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTT
EST: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAG GAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTTEST: gi|37837044|gb|BJ595052.1|BJ595052
genomic: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAGgcgagttcgt ... gtaatagcagGAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTT
EST: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAG GAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTTEST: gi|37844453|gb|BJ602461.1|BJ602461
genomic: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAGgcgagttcgt ... gtaatagcagGAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTT
EST: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAG GAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTTEST: gi|162278813|gb|FC454656.1|FC454656
genomic: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAGgcgagttcgt ... gtaatagcagGAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTT
EST: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAG GAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTTEST: gi|37852463|gb|BJ610471.1|BJ610471
genomic: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAGgcgagttcgt ... gtaatagcagGAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTT
EST: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAG GAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTT
genomic: CATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAGgcgagttcgt ... gtaatagcagGAATTAGATAAAATGAAATCAGAATTGTCAAGGATCGCCAACGTTCAGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGAATTAGGGATCTCTGTAGATGTAGTGGCCACAAGTGAGGTCAGTATATCATTGACATTGGACCCAGCGAAGCTCTGGGAACGGGCCCTAATTGAGCAGgcgagttcgtcataatgctcagttatcatgattttcgtatttaggggaactcactttctactttgtcctggaatcatgagtattcagagaaaatgaatta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -agagaaaa