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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAGgtgaatgatttgaagtcacgtgatctgtcccctcaaatgataaacctgttactggcttggtttcacagcttaagtaaccgtttttggctgtctgcatttagaatgaaatccattgttcgatccattcctaggtttcttatatcgttgtatacag

Basic information

species Physcomitrella patens
transcript PP1S264_64V6.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S264_64V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GRMZM2G126795_T01 (Zea mays), 5'ss of exon 10
AGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAGgtgaatg--atttgaagtcacgt-gatctgtcccctcaaatgataaacctgttactggcttggtttcacagcttaagtaaccgtttttggctgtctgcatttagaatgaaatccattgttcgatccattcctaggtttcttatatcgttgtatacag
|| || |||||||||||||| || |||||| | || |||||||| |||||||| ||||| || ||  | ||||| || || || ||||| ||  |||||||   ||  | || |  |      |||| || | ||      |   |      |   ||||||  |     ||||| |      |         ||   |                                                         
AGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAGgtatttggaaattaatattgttcagatccgttctctttctcaaactaagaaagaaaagcttggcgttttttcttaaatgttgagtaccaaaatcctaggt---------------------------------------------------------

upper sequence: PP1S264_64V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GRMZM2G126795_T02 (Zea mays), 5'ss of exon 10
AGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAGgtgaatg--atttgaagtcacgt-gatctgtcccctcaaatgataaacctgttactggcttggtttcacagcttaagtaaccgtttttggctgtctgcatttagaatgaaatccattgttcgatccattcctaggtttcttatatcgttgtatacag
|| || |||||||||||||| || |||||| | || |||||||| |||||||| ||||| || ||  | ||||| || || || ||||| ||  |||||||   ||  | || |  |      |||| || | ||      |   |      |   ||||||  |     ||||| |      |         ||                                                             
AGTGTGATGGAATATGAAGAGCATGAGAAAAGAGCATGGAGTGTTGATTTTTCTCGAACAGAGCCTTCAATGCTAGTATCTGGGAGTGACGATTGCAAGgtatttggaaattaatattgttcagatccgttctctttctcaaactaagaaagaaaagcttggcgttttttcttaaatgttgagtaccaaaatcctag-----------------------------------------------------------

upper sequence: PP1S264_64V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA14G05430.1 (Glycine max), 5'ss of exon 9
AGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAGgtgaatgatttgaagtcacgtgatctgtcccctcaaatgataaacctgttactggcttggtttcacagcttaagtaaccgtttttggctgtctgcatttagaatgaaatccat--tgttcgatccattcctaggtttcttatatcgttgtatacag
||  | |||||||||||||| || || || || || |||||||| ||||||||| |||| |||||  |||||||||| || || || |||||| | |||||     | |||||        || | |         ||  |    |  | |  | ||   |  |  ||||  ||||   |||         | | |||  |||||||  |||  | |  ||   ||                             
AGTTTAATGGAATATGAAGAGCATGAAAAGCGTGCATGGAGTGTTGATTTTTCAAGAACAGACCCCTCTATGCTTGTATCTGGTAGCGATGACTGTAAGgt-----acttgaaac------atttatt--------tggaagtttttgtgcaagtttccctaaaatgcttctgtaa---tttccaa-----tacttttgaaatgaaaatcatgctttctgaattat-----------------------------

upper sequence: PP1S264_64V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: AT2G32950.1 (Arabidopsis thaliana), 5'ss of exon 9
AGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAGgtgaatgatttgaagtcacgtgatctgtcccctcaaatgataaacctgttactggcttggtttcacagcttaagta-accgtttttggctgtctgc-atttagaatgaaatccattgttcgatccattcctaggtttcttatatcgttgtatacag
||  | ||||| |||||||| ||||| ||||| ||||||||||| || ||||||||||| || ||  | |||||||| || || ||||| ||| ||||||| |||   |  |  |     | | |  ||  |||  | | |    ||     ||||  || ||| |    ||| | ||   |||| | | ||| | |  |   || |                                                
AGTCTTATGGAGTATGAAGAGCACGAAAAACGTGCCTGGAGTGTTGACTTTTCACGAACAGAACCATCAATGCTTGTATCTGGTAGTGACGACTGCAAGgtaaatatctccatattttccgttatcacctttcatctcaca---ttg-----ggctatgtctcatataaaaagaatactacttttagatatctcctagctcttataa------------------------------------------------

upper sequence: PP1S264_64V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 5'ss of exon 9
AGCGTCATGGAATATGAAGAACACGAGAAACGGGCCTGGAGTGTAGATTTTTCACGAACTGACCCGACTATGCTTGTGTCAGGAAGTGATGACGGCAAGgtgaatgatttgaagtcacgtgatctgtcccctcaaatgataaacctgttactggcttggtttcacagcttaagtaaccgtttttggctgtctgcatttagaa-tgaaatccattgttcgatccattcctaggtttcttatatcgttgtatacag
|| || |||||||||||||| || || |||||||| |||||||| ||||||||||| || || ||  | | |||||| || || ||||||||  | |||||     |||  |   ||| |  | |    | | |||    ||| || |  || | ||| ||        ||||  ||| | |||   ||     ||  | || ||||||                                             
AGTGTGATGGAATATGAAGAGCATGAAAAACGGGCATGGAGTGTTGATTTTTCACGCACAGAACCCTCAAGGCTTGTATCTGGCAGTGATGATTGTAAGgt-----attgcagaacacttagtata---ctttaaac--caaatctat--cttgattgcttaagtgatctaagataccatgtttaattgctaaaatagaaaaatgaaatgg-------------------------------------------