Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATATCTTGGTGGTTTCCAAATATTACTCGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAGgtactaattctcaaaattttgtgacttggtttttcactatgtttgtatgttttatgagtcgattttgttaatgagatgatgccatgttagatgtcgacga...

Basic information

species Physcomitrella patens
transcript PP1S257_89V6.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18334443|gb|BJ166460.1|BJ166460
EST:     CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAG                         GAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
genomic: CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAGgtactaattc ... catatgacagGAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
EST: gi|208395944|gb|DC915704.1|DC915704
EST:     CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAG                         GAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
genomic: CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAGgtactaattc ... catatgacagGAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
EST: gi|18334715|gb|BJ166732.1|BJ166732
EST:     CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAG                         GAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
genomic: CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAGgtactaattc ... catatgacagGAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
EST: gi|162278918|gb|FC454969.1|FC454969
EST:     CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAG                         GAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
genomic: CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAGgtactaattc ... catatgacagGAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
EST: gi|162160422|gb|FC337423.1|FC337423
EST:     CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAG                         GAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
genomic: CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAGgtactaattc ... catatgacagGAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
EST: gi|162261867|gb|FC438391.1|FC438391
EST:     CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAG                         GAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
genomic: CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAGgtactaattc ... catatgacagGAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
EST: gi|37848402|gb|BJ606410.1|BJ606410
EST:     CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAG                         GAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
genomic: CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAGgtactaattc ... catatgacagGAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
EST: gi|37848391|gb|BJ606399.1|BJ606399
EST:     CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAG                         GAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG
genomic: CGAGAATCACCTTGACGAGGCTTTCAGAACTGTTGTGCCTCAGCCTCCAGgtactaattc ... catatgacagGAAACGGAGAAGCATCTCTCAGAGATGGTGGTTTCGAAGGCCTTGATTGCG