1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
GAGTTCCTTGGAGTTGTTGCCCCGACTTCGTACGGTTGCAGCTACTTTTTGAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAGgtgattcattatttcgttgcgtgggttgagtaaggaagagtgttgttatgtgttttggcagcagttacttggagtgtgatacggtgtaaagtagtaagagatgcaggggtagtgaatgatggacttactggggagtttacccggttgcag
species | Physcomitrella patens |
transcript | PP1S24_237V6.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAG GACGTCTTGCCAATGATATTGAGCAGCTGTCAAATGAGGCTGCTGCCAACTEST: gi|162184634|gb|FC360832.1|FC360832
genomic: GAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAGgtgattcatt ... ccggttgcagGACGTCTTGCCAATGATATTGAGCAGCTGTCAAATGAGGCTGCTGCCAACT
EST: GAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAG GACGTCTTGCCAATGATATTGAGCAGCTGTCAAATGAGGCTGCTGCCAACTEST: gi|162225425|gb|FC401203.1|FC401203
genomic: GAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAGgtgattcatt ... ccggttgcagGACGTCTTGCCAATGATATTGAGCAGCTGTCAAATGAGGCTGCTGCCAACT
EST: GAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAG GACGTCTTGCCAATGATATTGAGCAGCTGTCAAATGAGGCTGCTGCCAACTEST: gi|162175629|gb|FC351827.1|FC351827
genomic: GAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAGgtgattcatt ... ccggttgcagGACGTCTTGCCAATGATATTGAGCAGCTGTCAAATGAGGCTGCTGCCAACT
EST: GAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAG GACGTCTTGCCAATGATATTGAGCAGCTGTCAAATGAGGCTGCTGCCAACTEST: gi|162222228|gb|FC397664.1|FC397664
genomic: GAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAGgtgattcatt ... ccggttgcagGACGTCTTGCCAATGATATTGAGCAGCTGTCAAATGAGGCTGCTGCCAACT
EST: GAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAG GACGTCTTGCCAATGATATTGAGCAGCTGTCAAATGAGGCTGCTGCCAACTEST: gi|162165715|gb|FC340896.1|FC340896
genomic: GAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAGgtgattcatt ... ccggttgcagGACGTCTTGCCAATGATATTGAGCAGCTGTCAAATGAGGCTGCTGCCAACT
EST: GAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAG GACGTCTTGCCAATGATATTGAGCAGCTGTCAAATGAGGCTGCTGCCAACT
genomic: GAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAGgtgattcatt ... ccggttgcagGACGTCTTGCCAATGATATTGAGCAGCTGTCAAATGAGGCTGCTGCCAACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTTCCTTGGAGTTGTTGCCCCGACTTCGTACGGTTGCAGCTACTTTTTGAACCTTCACAAGGCAACAGGGCACCCTGTGTTGGTATACATGCCTGCAGgtgattcattatttcgttgcgtgggttgagtaaggaagagtgttgttatgtgttttggcagcagttacttggagtgtgatacggtgtaaagtagtaagagatgcaggggtagtgaatgatggacttactggggagtttacccggttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG