Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGGATAAAGTTTTTGGACCTGGAAATCAGTATGTTACGGCTGCAAAAATGTTGCTTCAGgcatgtctcacacactcattagctcttttccatttcgtgttgttccctctgcctatcgaatgtgaaatttatcgcatctgctcatttcttcagtgcagat...

Basic information

species Physcomitrella patens
transcript PP1S233_40V6.1
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S233_40V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: LOC_Os01g13190.1 (Oryza sativa), 5'ss of exon 9
GTGGATAAAGTTTTTGGACCTGGAAATCAGTATGTTACGGCTGCAAAAATGTTGCTTCAGgcatgtctcacacactcattagctcttttccatttcgtgttgttccctctgcctatcgaatgtgaaatttatcgcatctgctcatttcttcagtgcagat
|| || ||| | ||||||||||||||||||||||| ||||||||||||||| | |||||||      |   |  || || |  ||| |   ||   |     |  |  |  |||   ||     | |||| ||   | || |                  
GTTGAAAAAATATTTGGACCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTTCAGg------ttctattctgatca-ttctgtaaaatcctgaacaatatctgc--cctggtga---caatatttttcttgtttgatggcag-------------

upper sequence: PP1S233_40V6.1 (Physcomitrella patens), 5'ss of exon 10
lower sequence: Vv18s0166g00300.t01 (Vitis vinifera), 5'ss of exon 11
GTGGATAAAGTTTTTGGACCTGGAAATCAGTATGTTACGGCTGCAAAAATGTTGCTTCAGgcatg-----------tctcacacactcattagctcttttccatttcgtgttgttccctctgcctatcgaatgtgaaatttatcgcatctgctcatttcttcagtgcagat----
||||| ||  ||||||| ||||||||||||||||| ||||||||||||||| | || || | | |           |  || |   | ||| |  || | |  ||| |   | |      | |  |||  || |  |  | ||    |    |   || ||   | ||       
GTGGAAAAGATTTTTGGCCCTGGAAATCAGTATGTCACGGCTGCAAAAATGATTCTCCAAgtaggcacacatttccttccaaaagattattggaactctacttttttgctgtctatatgatacacatcttatcttgatatgattctgttgcttttctttttttattcatcaacag