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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaacattttgttattttctgttaataaattactttaatttttatctttaataaactgttgatcctcattcaattcgtatgtttggtgttgacgaatcttgttcaatacttattagtaagtgaaattgtgagagccaaccaattgtggtatctaatcatatgtgcgttgatatggtgacag

Basic information

species Physcomitrella patens
transcript PP1S227_66V6.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7207714|gb|AW561711.1|AW561711
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162224564|gb|FC400460.1|FC400460
EST:     CAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: CAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|208386457|gb|DC949130.1|DC949130
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162179912|gb|FC355983.1|FC355983
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162198076|gb|FC372103.1|FC372103
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|100388195|gb|BY951797.1|BY951797
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162190641|gb|FC367527.1|FC367527
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162213332|gb|FC389620.1|FC389620
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162278617|gb|FC455015.1|FC455015
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|7286764|gb|AW599251.1|AW599251
EST:     TACAAGAATACAGATNTGACGTCTCANAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTTCAGACAAC
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAAC
EST: gi|37839307|gb|BJ597315.1|BJ597315
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCNTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162262853|gb|FC439272.1|FC439272
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162243292|gb|FC415641.1|FC415641
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162243293|gb|FC415642.1|FC415642
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162275070|gb|FC450929.1|FC450929
EST:     CGTCT-AAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: CGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|208376475|gb|DC918920.1|DC918920
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162213331|gb|FC389619.1|FC389619
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162261368|gb|FC437801.1|FC437801
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162261369|gb|FC437802.1|FC437802
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|208365347|gb|DC950790.1|DC950790
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162272776|gb|FC447973.1|FC447973
EST:     CTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: CTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|67725705|gb|BJ975964.1|BJ975964
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162172981|gb|FC347891.1|FC347891
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162262854|gb|FC439273.1|FC439273
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162237332|gb|FC412440.1|FC412440
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162159195|gb|FC334366.1|FC334366
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|37847506|gb|BJ605514.1|BJ605514
EST:     TACAAGGATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162267272|gb|FC442060.1|FC442060
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162222837|gb|FC399299.1|FC399299
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162267271|gb|FC442059.1|FC442059
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|37841983|gb|BJ599991.1|BJ599991
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|37826305|gb|BJ584317.1|BJ584317
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162190640|gb|FC367526.1|FC367526
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|208382289|gb|DC919277.1|DC919277
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTNTGGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162258437|gb|FC434444.1|FC434444
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|67727259|gb|BJ977518.1|BJ977518
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162275069|gb|FC450928.1|FC450928
EST:     CGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: CGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162159194|gb|FC334365.1|FC334365
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|19778198|gb|BQ039280.1|BQ039280
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162222838|gb|FC399300.1|FC399300
EST:     TACAAGAATACAGATTTGACGTCTCANAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACA
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACA
EST: gi|162158368|gb|FC334163.1|FC334163
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|18335837|gb|BJ167858.1|BJ167858
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|19782687|gb|BQ039891.1|BQ039891
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|37853540|gb|BJ611548.1|BJ611548
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162237331|gb|FC412439.1|FC412439
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
EST: gi|162199218|gb|FC375054.1|FC375054
EST:     TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAG                         CCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG
genomic: TACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 32 (downstream exon)
Score: 20

CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaac ... atggtgacagCCACATTCTCCAGACAACAGGGGTTTGGCTCGAGAGTGCAAGGATGTTAAGATTGACCGCGTTTACATTGGGTCATGCACTGGTGGAAAGACTGAAGATT




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTCTTACAAGAATACAGATTTGACGTCTCAAAGCTGGAGCCTCTTGTAGCCAAGgtttgtcaacattttgttattttctgttaataaattactttaatttttatctttaataaactgttgatcctcattcaattcgtatgtttggtgttgacgaatcttgttcaatacttattagtaagtgaaattgtgagagccaaccaattgtggtatctaatcatatgtgcgttgatatggtgacag

- - - - - - - - - - - - - - -  AAGCTG
- - - - - - - - - - - - - - - -  GCTGGA