Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTTCTGTGTCTGGTAGCCATGGAGAAACCTGTTTCTCTCAGCCCTGAGCATGTTCGGGATGAAAAAGTCAAGgtacgctgaatctttttgcatttgcaatacaattcacctgcttgcatgtgtggttcatcaattctgattattatacgtttcacggacag

Basic information

species Physcomitrella patens
transcript PP1S222_130V6.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S222_130V6.3 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA16G06850.3 (Glycine max), 5'ss of exon 10
GTTCTGTGTCTGGTAGCCATGGAGAAACCTGTTTCTCTCAGCCCTGAGCATGTTCGGGATGAAAAAGTCAAGgtacgctgaatctttttgcatttgcaatacaattcacctgcttgcatgtgtggttcatcaattctgattattatacgtttcacggacag----------------
||||| ||  |||| || ||||| ||||| ||||||||||| ||||||||  |||||||||| ||||| |||||  ||    |    ||  |||| ||    ||||    | ||  | | |||  ||  |   |||||   | ||    |  |||  ||                  
GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctctttccattcaattttcatgggaatta--ttactctcttctgtcattttt---ttctgcccagtaattctgacacaaactaatcaatatcagtacca

upper sequence: PP1S222_130V6.3 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GLYMA19G24250.1 (Glycine max), 5'ss of exon 10
GTTCTGTGTCTGGTAGCCATGGAGAAACCTGTTTCTCTCAGCCCTGAGCATGTTCGGGATGAAAAAGTCAAGgtacgctgaatctttttgcatttgcaatacaatt-----cacctgcttgcatgtgtggttcatcaattctgattattatacgtt--tcacggacag----
||||| ||  |||| || ||||| ||||| ||||||||||| ||||||||  |||||||||| ||||| |||||  ||    |    ||  |||| || |  ||||        || ||| ||| |     |    | || |   |   | |   |  |||    |||    
GTTCTTTGCTTGGTTGCTATGGAAAAACCAGTTTCTCTCAGGCCTGAGCACATTCGGGATGAGAAAGTGAAGgtgtgcctctttccattcaattttcattggaattattactctcttctttcattttattctgcctacttttttctgacacaaactaatcaatatcagtacc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162153066|gb|FC330096.1|FC330096
EST:     AGAAACCTGTTTCTCTCAGCCCTGAGCATGTTCGGGATGAAAAAGTCAAG                         GTTCTGCAATGTATTGAGCCCATCAACGAGGAAGAGGTGGTGATCGGGCAG
genomic: AGAAACCTGTTTCTCTCAGCCCTGAGCATGTTCGGGATGAAAAAGTCAAGgtacgctgaa ... tcacggacagGTTCTGCAATGTATTGAGCCCATCAACGAGGAAGAGGTGGTGATCGGGCAG
EST: gi|162165174|gb|FC341676.1|FC341676
EST:     AGAAACCTGTTTCTCTCAGCCCTGAGCATGTTCGGGATGAAAAAGTCAAG                         GTTCTGCAATGTATTGAGCCCATCAACGAGGAAGAGGTGGTGATCGGGCAG
genomic: AGAAACCTGTTTCTCTCAGCCCTGAGCATGTTCGGGATGAAAAAGTCAAGgtacgctgaa ... tcacggacagGTTCTGCAATGTATTGAGCCCATCAACGAGGAAGAGGTGGTGATCGGGCAG
EST: gi|162263641|gb|FC440125.1|FC440125
EST:     AGAAACCTGTTTCTCTCAGCCCTGAGCATGTTCGGGATGAAAAAGTCAAG                         GTTCTGCAATGTATTGAGCCCATCAACGAGGAAGAGGTGGTGATCGGGCAG
genomic: AGAAACCTGTTTCTCTCAGCCCTGAGCATGTTCGGGATGAAAAAGTCAAGgtacgctgaa ... tcacggacagGTTCTGCAATGTATTGAGCCCATCAACGAGGAAGAGGTGGTGATCGGGCAG
EST: gi|162276852|gb|FC452534.1|FC452534
EST:     AGAAACCTGTTTCTCTCAGCCCTGAGCATGTTCGGGATGAAAAAGTCAAG                         GTTCTGCAATGTATTGAGCCCATCAACGAGGAAGAGGTGGTGATCGGGCAG
genomic: AGAAACCTGTTTCTCTCAGCCCTGAGCATGTTCGGGATGAAAAAGTCAAGgtacgctgaa ... tcacggacagGTTCTGCAATGTATTGAGCCCATCAACGAGGAAGAGGTGGTGATCGGGCAG