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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaagtacaatttgttgtctacttttgtgttcgaccaaataaacaagaattgaatggactacgcggtctgtcacggcgtgctcacctgtgaagttgtgttcag

Basic information

species Physcomitrella patens
transcript PP1S219_94V6.4
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|208397534|gb|DC916404.1|DC916404
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162270288|gb|FC447300.1|FC447300
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|37823739|gb|BJ581805.1|BJ581805
EST:     TTCAGAGAAGCACTAGACTCCAACCCTTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: TTCAGAGAAGCACTAGACTCCAACCC-TCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162149641|gb|FC325834.1|FC325834
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162179399|gb|FC355399.1|FC355399
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162270289|gb|FC447301.1|FC447301
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162179007|gb|FC354315.1|FC354315
EST:     TGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: TGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162186427|gb|FC362983.1|FC362983
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162166751|gb|FC342720.1|FC342720
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162152577|gb|FC328855.1|FC328855
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162152576|gb|FC328854.1|FC328854
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162166261|gb|FC342854.1|FC342854
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162179008|gb|FC354316.1|FC354316
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|208375459|gb|DC945074.1|DC945074
EST:     TTCAGAGAAGCACTAGACTCCAACCCTCGATTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: TTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|37840646|gb|BJ598654.1|BJ598654
EST:     CTTTCAGAGAAGCACTAGACTCCAACCCTNCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CTTTCAGAGAAGCACTAGACTCCAACCCT-CGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162192024|gb|FC367237.1|FC367237
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162166619|gb|FC343511.1|FC343511
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|208382503|gb|DC923173.1|DC923173
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162150766|gb|FC327038.1|FC327038
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162224661|gb|FC401909.1|FC401909
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|37844930|gb|BJ602938.1|BJ602938
EST:     TTCAGAGAAGCACTAGACTCCAACCCTTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: TTCAGAGAAGCACTAGACTCCAACCC-TCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162280382|gb|FC456087.1|FC456087
EST:     TTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: TTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|37840523|gb|BJ598531.1|BJ598531
EST:     GAGAAGCACTAGACTCCAACCCTTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: GAGAAGCACTAGACTCCAACCC-TCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162156545|gb|FC332153.1|FC332153
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162179121|gb|FC355586.1|FC355586
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|37824580|gb|BJ582646.1|BJ582646
EST:     TCAGAGAAGCACTAGACTCCAACCNTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: TCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|67726412|gb|BJ976671.1|BJ976671
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162179122|gb|FC355587.1|FC355587
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|208373778|gb|DC956294.1|DC956294
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|208396900|gb|DC915948.1|DC915948
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162188973|gb|FC364363.1|FC364363
EST:     TGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: TGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162224660|gb|FC401908.1|FC401908
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162177007|gb|FC353684.1|FC353684
EST:     AGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: AGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162150767|gb|FC327039.1|FC327039
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|208349261|gb|DC918011.1|DC918011
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|18338206|gb|BJ170230.1|BJ170230
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|18340066|gb|BJ172094.1|BJ172094
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|37828442|gb|BJ586454.1|BJ586454
EST:     TCAGAGAAGCACTAGACTCCAACCCTNCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCCGGGAGGCTCTTATTGAAACAAGAA
genomic: TCAGAGAAGCACTAGACTCCAACCCT-CGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTA-CCGGGAGGCTCTTATTGAAACAAGAA
EST: gi|162270867|gb|FC446896.1|FC446896
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|37844931|gb|BJ602939.1|BJ602939
EST:     GACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: GACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162190654|gb|FC367540.1|FC367540
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162149669|gb|FC326720.1|FC326720
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|208360647|gb|DC946413.1|DC946413
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGNTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162230608|gb|FC406031.1|FC406031
EST:     CTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162156546|gb|FC332154.1|FC332154
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
EST: gi|162157381|gb|FC333483.1|FC333483
EST:     CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGAC                         GTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT
genomic: CCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaa ... ttgtgttcagGTATCAAATGAACCCCGCGAACTACCGGGAGGCTCTTATTGAAACAAGAAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
ATACGCTAGTGCCTTTTACGGCCCTTTCAGAGAAGCACTAGACTCCAACCCTCGCTTCGGTGACAAAAAGACgtgagtttaagtacaatttgttgtctacttttgtgttcgaccaaataaacaagaattgaatggactacgcggtctgtcacggcgtgctcacctgtgaagttgtgttcag

- - - - - - - - - - - - - - - AGAAGC