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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTATCACTTGGTTACAACAAAAGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgtcacgaaaccatttctacttgcgctagctttcaacatgtttcttcattctgcatatcttgagcacgtattacaagacatttctaacacgatacttgtgctttatatgcag

Basic information

species Physcomitrella patens
transcript PP1S215_91V6.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37826799|gb|BJ584811.1|BJ584811
EST:     AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACA                         AGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
genomic: AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgt ... ttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
EST: gi|208374913|gb|DC956186.1|DC956186
EST:     AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACA                         AGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
genomic: AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgt ... ttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
EST: gi|67694099|gb|BJ954332.1|BJ954332
EST:     AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACA                         AGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
genomic: AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgt ... ttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
EST: gi|67570801|gb|BJ943625.1|BJ943625
EST:     AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACA                         AGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAG
genomic: AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgt ... ttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAG
EST: gi|7287125|gb|AW599612.1|AW599612
EST:     AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACA                         AGGTAAAACCAACTTTTTTGAGAAACGGGTGGGA
genomic: AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgt ... ttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGA
EST: gi|162262141|gb|FC437910.1|FC437910
EST:     AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACA                         AGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC
genomic: AGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgt ... ttatatgcagAGGTAAAACCAACTTTTTTGAGAAACGGGTGGGAGAGTACCAGAAGGCCTC

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTATCACTTGGTTACAACAAAAGATACAATGCCCGCAATCCTTTCGATTGGATGGAACTCATCTCCTTACAgtaagtttgtcacgaaaccatttctacttgcgctagctttcaacatgtttcttcattctgcatatcttgagcacgtattacaagacatttctaacacgatacttgtgctttatatgcag

- - - - - - - - - - - - - - - - - - - - - - - - - GATGGA