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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTAGGTGATATTGCGACGTTCCCAATGAAGATGTACGGCGACACTCGGCGAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtgctctatgcttatatctgaattgaatcagtaaatcactacgtgccttctttatgacaccttgggtatgctttgcacttaatttactggaaagtcctaatacattgttctgcaaactgattgtgaacag

Basic information

species Physcomitrella patens
transcript PP1S211_74V6.2
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162272098|gb|FC447892.1|FC447892
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37847063|gb|BJ605071.1|BJ605071
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37842299|gb|BJ600307.1|BJ600307
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162269070|gb|FC444938.1|FC444938
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162178671|gb|FC354460.1|FC354460
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37842298|gb|BJ600306.1|BJ600306
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37833772|gb|BJ591784.1|BJ591784
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|208374031|gb|DC948900.1|DC948900
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162252208|gb|FC425886.1|FC425886
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162168121|gb|FC343811.1|FC343811
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162162176|gb|FC337750.1|FC337750
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37851750|gb|BJ609758.1|BJ609758
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162150157|gb|FC326034.1|FC326034
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162247320|gb|FC420284.1|FC420284
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162200524|gb|FC376719.1|FC376719
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162211738|gb|FC387402.1|FC387402
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37853592|gb|BJ611600.1|BJ611600
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37841002|gb|BJ599010.1|BJ599010
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTNCNTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|18336777|gb|BJ168800.1|BJ168800
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162163966|gb|FC339876.1|FC339876
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162210761|gb|FC386657.1|FC386657
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162169587|gb|FC345527.1|FC345527
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|67693861|gb|BJ954094.1|BJ954094
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162193928|gb|FC371741.1|FC371741
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162189414|gb|FC365428.1|FC365428
EST:     AGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: AGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162232302|gb|FC408645.1|FC408645
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162188141|gb|FC363907.1|FC363907
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|37847398|gb|BJ605406.1|BJ605406
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|67695526|gb|BJ955759.1|BJ955759
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162161769|gb|FC338209.1|FC338209
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162177473|gb|FC353734.1|FC353734
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162217182|gb|FC392546.1|FC392546
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162247321|gb|FC420285.1|FC420285
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|18339129|gb|BJ171155.1|BJ171155
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTNCAGAGAAGGGCGAAGTCGTGGANGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162177712|gb|FC354546.1|FC354546
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|208345387|gb|DC917312.1|DC917312
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
EST: gi|162272099|gb|FC447893.1|FC447893
EST:     GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAG                         GCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG
genomic: GAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtg ... ttgtgaacagGCTATCAAAGCTGCAGAGAAGGGCGAAGTCGTGGACGAGTACGATTACCTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGTAGGTGATATTGCGACGTTCCCAATGAAGATGTACGGCGACACTCGGCGAGTGGAGCATGTGGATCATGCAAGGAAGTCGGCCATGCAGGCTGTGCAGgtatgtagtgctctatgcttatatctgaattgaatcagtaaatcactacgtgccttctttatgacaccttgggtatgctttgcacttaatttactggaaagtcctaatacattgttctgcaaactgattgtgaacag

- - - - - - - - - - - - - - - - - - - - - - - - -  AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA