1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
AAGACCCTATCACAGGTTAGCAAAGTACGACCCGTTGGTACTGCGGCGTACTTGGGAAATATCAAGCAGCTTTCGACCCAGAATTGCAAGGTTTCCCAAGgtacactaatttatgtggactaaccagagtagaaatctaagtgtaaggattggtgtttaaacttcttgttatatatctctaaagcgtttgattattataggcgcatttttcaaatttagagcagtttatcatcaagaccttttatttgtttgcacag
species | Physcomitrella patens |
transcript | PP1S209_135V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AATATCAAGCAGCTTTCGACCCAGAATTGCAAGGTTTCCCAAG GTCACGATTGGCTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGTEST: gi|162268243|gb|FC444532.1|FC444532
genomic: AATATCAAGCAGCTTTCGACCCAGAATTGCAAGGTTTCCCAAGgtacactaat ... gtttgcacagGTCACGATTGGCTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGT
EST: CTTGGGAAATATCAAGCAGCTTTCGACCCAGAATTGCAAGGTTTCCCAAG GTCACGATTGGCTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGTEST: gi|162242621|gb|FC414999.1|FC414999
genomic: CTTGGGAAATATCAAGCAGCTTTCGACCCAGAATTGCAAGGTTTCCCAAGgtacactaat ... gtttgcacagGTCACGATTGGCTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGT
EST: GGGAAATATCAAGCAGCTTTCGACCCAGAATTGCAAGGTTTCCCAAG GTCACGATTGGCTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGTEST: gi|162194101|gb|FC370276.1|FC370276
genomic: GGGAAATATCAAGCAGCTTTCGACCCAGAATTGCAAGGTTTCCCAAGgtacactaat ... gtttgcacagGTCACGATTGGCTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGT
EST: CTTGGGAAATATCAAGCAGCTTTCGACCCAGAA-TGCAAGGTTTCCCAAG GTCACGATTGGCTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGTEST: gi|162244831|gb|FC420183.1|FC420183
genomic: CTTGGGAAATATCAAGCAGCTTTCGACCCAGAATTGCAAGGTTTCCCAAGgtacactaat ... gtttgcacagGTCACGATTGGCTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGT
EST: CTTGGGAAATATCAAGCAGCTTTCGACCCAGAATTGCAAGGTTTCCCAAG GTCACGATTGGCTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGTEST: gi|162242623|gb|FC415001.1|FC415001
genomic: CTTGGGAAATATCAAGCAGCTTTCGACCCAGAATTGCAAGGTTTCCCAAGgtacactaat ... gtttgcacagGTCACGATTGGCTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGT
EST: CTTGGGAAATATCAAGCAGCTTTCGACCCAGAATTGCAAGGTTTCCCAAG GTCACGATTGGCTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGT
genomic: CTTGGGAAATATCAAGCAGCTTTCGACCCAGAATTGCAAGGTTTCCCAAGgtacactaat ... gtttgcacagGTCACGATTGGCTGAATACATCGGTTTTATTGGAGGCTTTCGAGGCAAGGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGACCCTATCACAGGTTAGCAAAGTACGACCCGTTGGTACTGCGGCGTACTTGGGAAATATCAAGCAGCTTTCGACCCAGAATTGCAAGGTTTCCCAAGgtacactaatttatgtggactaaccagagtagaaatctaagtgtaaggattggtgtttaaacttcttgttatatatctctaaagcgtttgattattataggcgcatttttcaaatttagagcagtttatcatcaagaccttttatttgtttgcacag
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