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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAGCAGACATTACTAAAGAGCGAATTGAGAAAATTCTCAAGGCAGGGGCTAATGTGATTCTTACTACGAAGGGCATTGATGATATGTCTTTAAAGgtaggtacactggtgaaacatgcttatttcgcaaaggctgggcacaccaacacctaattcaaatattcagctttatcgaggagtacatactttgtgatttatttattttattatgtgtggttgatattatactgtatgtattggggtggaaacaatgttttgatgaacagtctatggtggatgcag

Basic information

species Physcomitrella patens
transcript PP1S200_112V6.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S200_112V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: LOC_Os04g46620.1 (Oryza sativa), 5'ss of exon 10
GGAAGCAGACATTACTAAAGAGCGAATTGAGAAAATTCTCAAGGCAGGGGCTAATGTGATTCTTACTACGAAGGGCATTGATGATATGTCTTTAAAGgtaggt---acactggt-gaaacatgcttatttcgcaaaggctgggcacaccaacacctaattcaaatattcag--ctttatcgaggagtacatactttgtgatttatttattttattatgtgtggttgatattatactgtatgtattggggtggaaacaatgttttgatgaacagtctatggtggatgcag
 ||| | ||||| || || |||||||||||||||||||| ||||| || ||||||||  | || || || ||||| ||||||||||||||  | |||||| ||   |  |  || ||||||| ||| | |  |  |          |   ||  |   ||  | |  | ||  || | |    || |  |||||  ||                                                                                           
AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTGAAGGCTGGTGCTAATGTTGTACTGACCACTAAGGGAATTGATGATATGTCACTGAAGgtatgttttattcaagtagaaacattcttttattacctaaatataatctattgacttc-ggttggactggtaagagctctgttattgattgaatacta-gta------------------------------------------------------------------------------------------

upper sequence: PP1S200_112V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: GRMZM2G039263_T01 (Zea mays), 5'ss of exon 10
GGAAGCAGACATTACTAAAGAGCGAATTGAGAAAATTCTCAAGGCAGGGGCTAATGTGATTCTTACTACGAAGGGCATTGATGATATGTCTTTAAAGgtaggtacactggtgaaacatgcttatttcgcaaaggctgggcacaccaacacctaattcaaatattcagctttatcgaggagtacatactttgtgatttatttattttattatgtgtggttgatattatactgtatgtattggggtggaaacaatgttttgatgaacagtctatggtggatgcag
 ||| | ||||| || || |||||||||||||||||||||||||| || ||||||||  |  | || || ||||| ||||| |||||||| || |||||  ||                 |||||  |  |    ||     |        || ||    |  | | ||||      || |    || || || |||  |  | ||| | |                                                                        
AGAATCTGACATAACAAAGGAGCGAATTGAGAAAATTCTCAAGGCTGGAGCTAATGTTGTGTTGACCACCAAGGGAATTGACGATATGTCCTTGAAGgtgtgtttttca-----------ttattcaggcagaagtgattctagt--tttttagttgctctggttaactttgcaacagaatg-gcacattttgctttcatactattagttt------------------------------------------------------------------------

upper sequence: PP1S200_112V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: EFJ12438 (Selaginella moellendorffii), 5'ss of exon 10
GGAAGCAGACATTACTAAAGAGCGAATTGAGAAAATTCTCAAGGCAGGGGCTAATGTGATTCTTACTACGAAGGGCATTGATGATATGTCTTTAAAGgtaggtacactggtgaaacatgcttatttcgcaa--aggctgggcacaccaacacctaattcaaatattcagctttatcgaggagtacatactttgtgatttatttattttattatgtgtggttgatattatactgtatgtattggggtggaaacaatgttttgatgaacagtctatggtggatgcag
|||| | |||||||| |||||  | ||| | || ||| | ||||| || ||||||||  |||| |||||||| || || |||||||||||||||||||||       |||   | |     | ||| | ||  || ||  | |  |    | || |                                                                                                                                 
GGAATCGGACATTACAAAAGAAAGGATTCAAAAGATTTTGAAGGCCGGTGCTAATGTCGTTCTCACTACGAAAGGAATAGATGATATGTCTTTAAAGgta-------tggctcagcgattctcttttgaaacgagactaaggat-ctgtgatctcag--------------------------------------------------------------------------------------------------------------------------------

upper sequence: PP1S200_112V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: EFJ34091 (Selaginella moellendorffii), 5'ss of exon 10
GGAAGCAGACATTACTAAAGAGCGAATTGAGAAAATTCTCAAGGCAGGGGCTAATGTGATTCTTACTACGAAGGGCATTGATGATATGTCTTTAAAGgtaggtacactggtgaaacatgcttatttcgcaaaggctgggcacaccaacacctaattcaaatattcagctttatcgaggagtacatactttgtgatttatttattttattatgtgtggttgatattatactgtatgtattggggtggaaacaatgttttgatgaacagtctatggtggatgcag
|||| | |||||||| |||||  | ||| | || ||| | ||||| || ||||||||  |||| |||||||| || || |||||||||||||||||||||       |||   | |     | ||| |   |  |  | |  |  | |    |  |||                                                                                                                             
GGAATCGGACATTACAAAAGAAAGGATTCAAAAGATTTTGAAGGCCGGTGCTAATGTCGTTCTCACTACGAAAGGAATAGATGATATGTCTTTAAAGgta-------tggctcagcgattctcttttg---aaacgagactaaggagctgtgatctcag----------------------------------------------------------------------------------------------------------------------------