1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCGGAAAGTGCAATGGCAGCTTTGAATTGCAGTGGCGCAATATTAGGTTCTCTTCCAATCAGgtgtgcctcctcctcctctagccgaggacttaatggtgtgttcacacgcatgctttagcataaactgtttcccagtaaaataacccaagaatcttttgtc...
species | Physcomitrella patens |
transcript | PP1S196_50V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: ATGGCAGCTTTGAATTGCAGTGGCGCAATATTAGGTTCTCTTCCAATCAG AGTGAGCCCATCGAAGACGCCAGTGAGGEST: gi|67575157|gb|BJ947981.1|BJ947981
genomic: ATGGCAGCTTTGAATTGCAGTGGCGCAATATTAGGTTCTCTTCCAATCAGgtgtgcctcc ... tctcgtgcagAGTGAGCCCATCGAAGACGCCAGTGAGG
EST: ATGGCAGCTTTGAATTGCAGTGGCGCAATATTAGGTTCTCTTCCAATCAG AGTGAGCCCATCGAAGACGCCAGTGAGGCCCCGGTCACCGCGTTCTCCGCTEST: gi|162272246|gb|FC448755.1|FC448755
genomic: ATGGCAGCTTTGAATTGCAGTGGCGCAATATTAGGTTCTCTTCCAATCAGgtgtgcctcc ... tctcgtgcagAGTGAGCCCATCGAAGACGCCAGTGAGGCCCCGGTCACCGCGTTCTCCGCT
EST: ATGGCAGCTTTGAATTGCAGTGGCGCAATATTAGGTTCTCTTCCAATCAG AGTGAGCCCATCGAAGACGCCAGTGAGGCCCCGGTCACCGCGTTCTCCGCTEST: gi|67698614|gb|BJ958847.1|BJ958847
genomic: ATGGCAGCTTTGAATTGCAGTGGCGCAATATTAGGTTCTCTTCCAATCAGgtgtgcctcc ... tctcgtgcagAGTGAGCCCATCGAAGACGCCAGTGAGGCCCCGGTCACCGCGTTCTCCGCT
EST: ATGGCAGCTTTGAATTGCAGTGGCGCAATATTAGGTTCTCTTCCAATCAG AGTGAGCCCATCGAAGACGCCAGTGAGGCCCCGGTCACCGCGTTCTCCGCT
genomic: ATGGCAGCTTTGAATTGCAGTGGCGCAATATTAGGTTCTCTTCCAATCAGgtgtgcctcc ... tctcgtgcagAGTGAGCCCATCGAAGACGCCAGTGAGGCCCCGGTCACCGCGTTCTCCGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCGGAAAGTGCAATGGCAGCTTTGAATTGCAGTGGCGCAATATTAGGTTCTCTTCCAATCAGgtgtgcctcctcctcctctagccgaggacttaatggtgtgttcacacgcatgctttagcataaactgtttcccagtaaaataacccaagaatcttttgtc
- - - - - - - GCAGCT