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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AATGGAAGTAGTGAACCGCCTAACAACAACTGTGGATCTTCCCACTGAGTTTGTTCATATGTACATCTCCAATTGTATATCATCATGTGAAAATATCAAGgttcggttttctaactcgtgctttgtgggtgggttgattcaatattcttgtgtcaatctcatcattaactaacaattacgttgtgtattgttcag

Basic information

species Physcomitrella patens
transcript PP1S166_16V6.2
intron # 10
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S166_16V6.2 (Physcomitrella patens), 5'ss of exon 10
lower sequence: Vv07s0130g00310.t01 (Vitis vinifera), 5'ss of exon 10
AATGGAAGTAGTGAACCGCCTAACAACAACTGTGGATCTTCCCACTGAGTTTGTTCATATGTACATCTCCAATTGTATATCATCATGTGAAAATATCAAGgttcggttttctaactcgtgctttgtgggtgggttgattcaatattcttgtgtcaatctcatcattaactaacaattacgttgtgtattgttcag---------
||||||||| || ||| | || || ||| | || || |||||||| || ||||| || ||||||||  | |||||||||||||| ||| |||| |||||||| |  || |  |  |  |||||| ||   |  ||  |  | | ||| | || ||| |  ||        ||   | ||    | ||| | |  |         
AATGGAAGTCGTTAACAGGCTTACTACAGCGGTTGAACTTCCCACCGAATTTGTACACATGTACATAACTAATTGTATATCATCTTGTCAAAACATCAAGgtccttttcttcactt--tgctttctgatagcattt-tatattgttcct-tgacaaacggatttcagcaaaattctgactggatttatcgctgggcttgagtaa