1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttcttaagcagctagagattgttaaatgaacaaggttctacgtaagtatttattgatgcattcggtggcaagacggatgtagttcaaattgtaattgaatcaatattgtcttggacgtatctggtacag
species | Physcomitrella patens |
transcript | PP1S159_2V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCT TAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCTEST: gi|162279998|gb|FC456184.1|FC456184
genomic: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttct ... tctggtacagTAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
EST: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCT TAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCTEST: gi|162255997|gb|FC431761.1|FC431761
genomic: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttct ... tctggtacagTAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
EST: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCT TAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCTEST: gi|208346091|gb|DC917044.1|DC917044
genomic: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttct ... tctggtacagTAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
EST: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCT TAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCTEST: gi|208386288|gb|DC953001.1|DC953001
genomic: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttct ... tctggtacagTAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
EST: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCT TAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCTEST: gi|37836145|gb|BJ594153.1|BJ594153
genomic: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttct ... tctggtacagTAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
EST: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCT TAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCTEST: gi|162174015|gb|FC350530.1|FC350530
genomic: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttct ... tctggtacagTAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
EST: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCT TAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCTEST: gi|162194114|gb|FC370289.1|FC370289
genomic: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttct ... tctggtacagTAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
EST: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCT TAATAATATGGGCAGATATGGTGCGTGACACAATCGCATGTCAGACATGCTEST: gi|162194113|gb|FC370288.1|FC370288
genomic: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttct ... tctggtacagTAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
EST: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCT TAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCTEST: gi|37832920|gb|BJ590932.1|BJ590932
genomic: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttct ... tctggtacagTAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
EST: GCAGCAATTGCAAGATATGCT TAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCTEST: gi|162164026|gb|FC339925.1|FC339925
genomic: GCAGCAATTGCAAGATATGCTgtaagtttct ... tctggtacagTAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
EST: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCT TAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCTEST: gi|162279999|gb|FC456185.1|FC456185
genomic: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttct ... tctggtacagTAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
EST: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCT TAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCTEST: gi|67727775|gb|BJ978034.1|BJ978034
genomic: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttct ... tctggtacagTAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
EST: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCT TAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
genomic: GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttct ... tctggtacagTAATAGTATGGGCGGAGATGGTGCGTGGGACAATCGCATGTCAGACATGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGATGCAAAACCCCCAGTACCGGCAGCAATTGCAAGATATGCTgtaagtttcttaagcagctagagattgttaaatgaacaaggttctacgtaagtatttattgatgcattcggtggcaagacggatgtagttcaaattgtaattgaatcaatattgtcttggacgtatctggtacag
- - - - - - - - - - - - - - - - - GCAAGA