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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCCGCTTCCGTAGCGAAGATCTTCTTAACTTCTGATGTTGTTGTTACCGAAATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaaggaaacagttttttgagtgcctgtgtgatttctattgggtcctgtctgcattttattgaagcctcatgacacatatctttctaatatttattcgtggctgcag

Basic information

species Physcomitrella patens
transcript PP1S14_298V6.1
intron # 10
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162191543|gb|FC368469.1|FC368469
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|37847899|gb|BJ605907.1|BJ605907
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162162748|gb|FC337802.1|FC337802
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162173846|gb|FC349438.1|FC349438
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162274031|gb|FC450378.1|FC450378
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|18333501|gb|BJ165516.1|BJ165516
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162248294|gb|FC422548.1|FC422548
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162153950|gb|FC329457.1|FC329457
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162158908|gb|FC334794.1|FC334794
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162176836|gb|FC353344.1|FC353344
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162175540|gb|FC350971.1|FC350971
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162187435|gb|FC362657.1|FC362657
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162181645|gb|FC357947.1|FC357947
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162175680|gb|FC351267.1|FC351267
EST:     AATCAAGGAAGCTAAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|67723761|gb|BJ974020.1|BJ974020
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAGACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162156888|gb|FC333042.1|FC333042
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|67725517|gb|BJ975776.1|BJ975776
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|37844241|gb|BJ602249.1|BJ602249
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162242319|gb|FC416101.1|FC416101
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162201562|gb|FC377951.1|FC377951
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162242333|gb|FC416102.1|FC416102
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|208398728|gb|DC916251.1|DC916251
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|208393744|gb|DC946066.1|DC946066
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162193666|gb|FC371245.1|FC371245
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162162747|gb|FC337801.1|FC337801
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGTTCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|208379255|gb|DC927266.1|DC927266
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|208356169|gb|DC918409.1|DC918409
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162171349|gb|FC346442.1|FC346442
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162170823|gb|FC347437.1|FC347437
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162162984|gb|FC339299.1|FC339299
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|208345188|gb|DC925685.1|DC925685
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162248295|gb|FC422549.1|FC422549
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162195953|gb|FC372150.1|FC372150
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|37840202|gb|BJ598210.1|BJ598210
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162274032|gb|FC450379.1|FC450379
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162176837|gb|FC353345.1|FC353345
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162167159|gb|FC343635.1|FC343635
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162227586|gb|FC403528.1|FC403528
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162175681|gb|FC351268.1|FC351268
EST:     AATCAAGGAAGCTAAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|37828026|gb|BJ586038.1|BJ586038
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|37833563|gb|BJ591575.1|BJ591575
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162210341|gb|FC386221.1|FC386221
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162192858|gb|FC370177.1|FC370177
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|37831121|gb|BJ589133.1|BJ589133
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162156889|gb|FC333043.1|FC333043
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|208362988|gb|DC957957.1|DC957957
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|37846332|gb|BJ604340.1|BJ604340
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162192859|gb|FC370178.1|FC370178
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162255392|gb|FC431806.1|FC431806
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162246716|gb|FC422709.1|FC422709
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162255991|gb|FC431755.1|FC431755
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162223353|gb|FC400582.1|FC400582
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162253682|gb|FC430420.1|FC430420
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162227911|gb|FC403719.1|FC403719
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGTTCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162194751|gb|FC371598.1|FC371598
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162158431|gb|FC334226.1|FC334226
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGTTCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|162157417|gb|FC333194.1|FC333194
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
EST: gi|208370457|gb|DC952160.1|DC952160
EST:     AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAG                         GATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT
genomic: AATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGT

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 31 (downstream exon)
Score: 9

GCCGCTTCCGTAGCGAAGATCTTCTTAACTTCTGATGTTGTTGTTACCGAAATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaag ... gtggctgcagGATACGGTTATTGAGGAAAAACAAATTTAGGAGATCTTGCGAGCACTTAGTAGTTGGGATGAGTTTTAATAAGATCGGGAATATTTGGAGTGGTGAGCCA




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GCCGCTTCCGTAGCGAAGATCTTCTTAACTTCTGATGTTGTTGTTACCGAAATCAAGGAAGCTGAGGTTGCTGTCGCCGGCAACCCAATGGATGCATCAGgtatttaaaggaaacagttttttgagtgcctgtgtgatttctattgggtcctgtctgcattttattgaagcctcatgacacatatctttctaatatttattcgtggctgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -  AGCTGA